[HTML][HTML] Advances in protein structure prediction and design
… sequence and structural databases. … prediction and design of protein structures, focusing
primarily on template-free methods that do not require an experimentally determined structure …
primarily on template-free methods that do not require an experimentally determined structure …
Protein structure prediction
B Al-Lazikani, J Jung, Z Xiang, B Honig - Current opinion in chemical …, 2001 - Elsevier
… prediction becomes a reality. Until recently, with few exceptions, the prediction of protein
structure has been of greater conceptual than practical importance in that predictions were …
structure has been of greater conceptual than practical importance in that predictions were …
[HTML][HTML] Highly accurate protein structure prediction with AlphaFold
… protein structure prediction as converting an ‘image’ of evolutionary couplings 22,23,24 to an
‘… ’ of the protein distance matrix and then integrating the distance predictions into a heuristic …
‘… ’ of the protein distance matrix and then integrating the distance predictions into a heuristic …
Protein structure prediction: when is it useful?
Y Zhang - Current opinion in structural biology, 2009 - Elsevier
… Approximate correspondence of the algorithms, accuracy, and the biological usefulness
of protein structure predictions. The pictures in the right panel are representative examples …
of protein structure predictions. The pictures in the right panel are representative examples …
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Progress and challenges in protein structure prediction
Y Zhang - Current opinion in structural biology, 2008 - Elsevier
… the most active areas in proteins structure prediction. Numerous algorithms have been
developed during the past 15 years for the purpose of identifying structure templates from the PDB…
developed during the past 15 years for the purpose of identifying structure templates from the PDB…
Protein structure prediction and structural genomics
… proteins and on the scale of whole genomes. We then discuss the important role that protein
structure prediction methods play in the growing worldwide effort in structural genomics. …
structure prediction methods play in the growing worldwide effort in structural genomics. …
Improved protein structure prediction using potentials from deep learning
… In this study, we present a deep-learning approach to protein structure prediction, the
stages of which are illustrated in Fig. 2a. We show that it is possible to construct a learned, …
stages of which are illustrated in Fig. 2a. We show that it is possible to construct a learned, …
Protein structure prediction
… The structural details of X-ray crystallography and nuclear magnetic resonance
spectroscopy-verified protein structures … and also useful in assessing the accuracy of the protein …
spectroscopy-verified protein structures … and also useful in assessing the accuracy of the protein …
The PSIPRED protein structure prediction server
… a protein from its amino acid sequence alone. PSIPRED (Jones, 1999a) carries out a reliable
secondary structure prediction on a protein and gives its name to the prediction server itself…
secondary structure prediction on a protein and gives its name to the prediction server itself…
[HTML][HTML] Deep learning methods in protein structure prediction
M Torrisi, G Pollastri, Q Le - Computational and Structural Biotechnology …, 2020 - Elsevier
… protein structural information at various levels of detail. In this review, we briefly introduce the
problem of protein structure prediction … two-dimensional Protein Structure Annotations, from …
problem of protein structure prediction … two-dimensional Protein Structure Annotations, from …