Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium

M Wang, J Li, Z Qi, Y Long, L Pei, X Huang… - Nature Genetics, 2022 - nature.com
rewiring of regulatory networks. Here, we constructed a pan-genome of the Gossypium genus
… -order chromatin structure reorganization and the rewiring of chromatin interactome. We …

Evolutionary Conservation and Divergence of Gene Coexpression Networks in Gossypium (Cotton) Seeds

G Hu, R Hovav, CE Grover… - Genome biology and …, 2016 - academic.oup.com
… The cotton genus (Gossypium) provides a superior system for the … changes, including
rewired edges and differentially … forms of a cultivated cotton, and regulatory connections of oil …

[HTML][HTML] Genomic rearrangements and evolutionary changes in 3D chromatin topologies in the cotton tribe (Gossypieae)

X Li, J Wang, Y Yu, G Li, J Wang, C Li, Z Zeng, N Li… - BMC biology, 2023 - Springer
… has a greater influence on regulating orthologous expression divergence than do … cotton
genus (Gossypium; 2n = 26) and its closely related East African/Madagascan sister genus (…

[HTML][HTML] Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton

J You, Z Liu, Z Qi, Y Ma, M Sun, L Su, H Niu, Y Peng… - Nature …, 2023 - nature.com
… The dynamics of genetic regulation of gene expression … the genetic regulation of fiber
development in allotetraploid cotton … Our work delineates the dynamics of gene regulation during …

[PDF][PDF] Comparative genome analyses highlight transposon-mediated genome expansion shapes the evolutionary architecture of 3D genomic folding in cotton

M Wang, J Li, P Wang, Z Liu, F Liu, GN Zhao… - Mol. Biol …, 2020 - pdfs.semanticscholar.org
genus, will lay the foundation for further study of the effect of transposon ampli cation on
genome size variation and the rewired transcriptional regulation… in the regulation of invasive …

[HTML][HTML] Cotton fiber as a model for understanding shifts in cell development under domestication

JJ Jareczek, CE Grover, JF Wendel - Frontiers in Plant Science, 2023 - frontiersin.org
Cotton is the most widely used plant textile in the world, derived from single-celled epidermal
seed trichomes produced by four domesticated species in the genus … the tight regulation of …

Evolutionary dynamics of chromatin structure and duplicate gene expression in diploid and allopolyploid cotton

G Hu, CE Grover, DL Vera, PY Lung… - Molecular Biology …, 2024 - academic.oup.com
… , we found distinct regulatory effects for hybridization and later … the evolution of cis-regulatory
landscapes and duplicate gene … The cotton genus, Gossypium, is well-established as a mod…

A super pan‐genome map provides genomic insights into evolution of diploid cotton species

X Wang, H Lu, Y Zhao, Z Zhang, J Li, Z Dong, Y Hao… - iMetaOmics - Wiley Online Library
cotton species To the editor, The Gossypium genus can be divided into eight diploid cotton
… to phenotypic differences in cotton fiber and identified regulatory variations that control the …

Expression patterns and functional divergence of homologous genes accompanied by polyploidization in cotton (Gossypium hirsutum L.)

Z Peng, H Cheng, G Sun, Z Pan, X Wang… - Science China Life …, 2020 - Springer
… biosynthetic processes, regulation of DNA-templated transcription, regulation of RNA … that
homolog expression rewiring shows a tissue/stage-specific manner in tetraploid cotton. Further…

[HTML][HTML] Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication

RA Rapp, CH Haigler, L Flagel, RH Hovav, JA Udall… - BMC biology, 2010 - Springer
… As reported elsewhere [1], the genus Gossypium appeared approximately 10 million years
… Pending further work, we speculate that finely controlled regulatory shifts for cotton fibre ISI1 …