Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium
M Wang, J Li, Z Qi, Y Long, L Pei, X Huang… - Nature Genetics, 2022 - nature.com
… rewiring of regulatory networks. Here, we constructed a pan-genome of the Gossypium genus
… -order chromatin structure reorganization and the rewiring of chromatin interactome. We …
… -order chromatin structure reorganization and the rewiring of chromatin interactome. We …
Evolutionary Conservation and Divergence of Gene Coexpression Networks in Gossypium (Cotton) Seeds
… The cotton genus (Gossypium) provides a superior system for the … changes, including
rewired edges and differentially … forms of a cultivated cotton, and regulatory connections of oil …
rewired edges and differentially … forms of a cultivated cotton, and regulatory connections of oil …
[HTML][HTML] Genomic rearrangements and evolutionary changes in 3D chromatin topologies in the cotton tribe (Gossypieae)
… has a greater influence on regulating orthologous expression divergence than do … cotton
genus (Gossypium; 2n = 26) and its closely related East African/Madagascan sister genus (…
genus (Gossypium; 2n = 26) and its closely related East African/Madagascan sister genus (…
[HTML][HTML] Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton
J You, Z Liu, Z Qi, Y Ma, M Sun, L Su, H Niu, Y Peng… - Nature …, 2023 - nature.com
… The dynamics of genetic regulation of gene expression … the genetic regulation of fiber
development in allotetraploid cotton … Our work delineates the dynamics of gene regulation during …
development in allotetraploid cotton … Our work delineates the dynamics of gene regulation during …
[PDF][PDF] Comparative genome analyses highlight transposon-mediated genome expansion shapes the evolutionary architecture of 3D genomic folding in cotton
… genus, will lay the foundation for further study of the effect of transposon ampli cation on
genome size variation and the rewired transcriptional regulation… in the regulation of invasive …
genome size variation and the rewired transcriptional regulation… in the regulation of invasive …
[HTML][HTML] Cotton fiber as a model for understanding shifts in cell development under domestication
… Cotton is the most widely used plant textile in the world, derived from single-celled epidermal
seed trichomes produced by four domesticated species in the genus … the tight regulation of …
seed trichomes produced by four domesticated species in the genus … the tight regulation of …
Evolutionary dynamics of chromatin structure and duplicate gene expression in diploid and allopolyploid cotton
… , we found distinct regulatory effects for hybridization and later … the evolution of cis-regulatory
landscapes and duplicate gene … The cotton genus, Gossypium, is well-established as a mod…
landscapes and duplicate gene … The cotton genus, Gossypium, is well-established as a mod…
A super pan‐genome map provides genomic insights into evolution of diploid cotton species
X Wang, H Lu, Y Zhao, Z Zhang, J Li, Z Dong, Y Hao… - iMetaOmics - Wiley Online Library
… cotton species To the editor, The Gossypium genus can be divided into eight diploid cotton
… to phenotypic differences in cotton fiber and identified regulatory variations that control the …
… to phenotypic differences in cotton fiber and identified regulatory variations that control the …
Expression patterns and functional divergence of homologous genes accompanied by polyploidization in cotton (Gossypium hirsutum L.)
Z Peng, H Cheng, G Sun, Z Pan, X Wang… - Science China Life …, 2020 - Springer
… biosynthetic processes, regulation of DNA-templated transcription, regulation of RNA … that
homolog expression rewiring shows a tissue/stage-specific manner in tetraploid cotton. Further…
homolog expression rewiring shows a tissue/stage-specific manner in tetraploid cotton. Further…
[HTML][HTML] Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication
… As reported elsewhere [1], the genus Gossypium appeared approximately 10 million years
… Pending further work, we speculate that finely controlled regulatory shifts for cotton fibre ISI1 …
… Pending further work, we speculate that finely controlled regulatory shifts for cotton fibre ISI1 …