SuperNatural: a searchable database of available natural compounds

M Dunkel, M Fullbeck, S Neumann… - Nucleic acids …, 2006 - academic.oup.com
Although tremendous effort has been put into synthetic libraries, most drugs on the market
are still natural compounds or derivatives thereof. There are encyclopaedias of natural …

The Blue Obelisk—interoperability in chemical informatics

R Guha, MT Howard, GR Hutchison… - Journal of chemical …, 2006 - ACS Publications
The Blue Obelisk Movement (http://www. blueobelisk. org/) is the name used by a diverse
Internet group promoting reusable chemistry via open source software development …

Exploring chemical information in PubChem

S Kim - Current protocols, 2021 - Wiley Online Library
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a public chemical database that
serves scientific communities as well as the general public. This database collects chemical …

ChemDraw Ultra 10.0 CambridgeSoft, 100 CambridgePark Drive, Cambridge, MA 02140. www. cambridgesoft. com. Commercial Price: 1910fordownload, 2150 for …

N Mills - 2006 - ACS Publications
ChemDraw is the “industry standard” chemical drawing package, as evidenced by the fact
that ACS journals refer to ChemDraw in the instructions to authors for the preparation of …

ChemMine tools: an online service for analyzing and clustering small molecules

TWH Backman, Y Cao, T Girke - Nucleic acids research, 2011 - academic.oup.com
ChemMine Tools is an online service for small molecule data analysis. It provides a web
interface to a set of cheminformatics and data mining tools that are useful for various …

[HTML][HTML] Confab-Systematic generation of diverse low-energy conformers

NM O'Boyle, T Vandermeersch, CJ Flynn… - Journal of …, 2011 - Springer
Background Many computational chemistry analyses require the generation of conformers,
either on-the-fly, or in advance. We present Confab, an open source command-line …

Similarity searching in databases of chemical structures

GM Downs, P Willett - Reviews in computational chemistry, 1996 - Wiley Online Library
Chemical structure databases contain machine-readable representations of traditional
chemical structure diagrams of molecules or their atomic coordinates: these are normally …

[HTML][HTML] Fast, efficient fragment-based coordinate generation for Open Babel

N Yoshikawa, GR Hutchison - Journal of cheminformatics, 2019 - Springer
Rapidly predicting an accurate three dimensional geometry of a molecule is a crucial task for
cheminformatics and across a wide range of molecular modeling. Consequently, developing …

MayaChemTools: an open source package for computational drug discovery

M Sud - Journal of chemical information and modeling, 2016 - ACS Publications
MayaChemTools is a growing collection of Perl scripts, modules, and classes to support a
variety of computational drug discovery needs, such as manipulation and analysis of data …

fconv: Format conversion, manipulation and feature computation of molecular data

G Neudert, G Klebe - Bioinformatics, 2011 - academic.oup.com
fconv is a program intended for parsing and manipulating multiple aspects and properties of
molecular data. Up to now, it has been developed and extensively tested for 3 years. It has …