fconv: Format conversion, manipulation and feature computation of molecular data

G Neudert, G Klebe - Bioinformatics, 2011 - academic.oup.com
fconv is a program intended for parsing and manipulating multiple aspects and properties of
molecular data. Up to now, it has been developed and extensively tested for 3 years. It has …

Progress on open chemoinformatic tools for expanding and exploring the chemical space

JL Medina-Franco, N Sánchez-Cruz… - Journal of Computer …, 2022 - Springer
The concept of chemical space is a cornerstone in chemoinformatics, and it has broad
conceptual and practical applicability in many areas of chemistry, including drug design and …

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy

Y Djoumbou Feunang, R Eisner, C Knox… - Journal of …, 2016 - Springer
Background Scientists have long been driven by the desire to describe, organize, classify,
and compare objects using taxonomies and/or ontologies. In contrast to biology, geology …

[引用][C] Encyclopedia of computational chemistry

A Horn, H Lanig - 1999 - Springer
If you need a good entry point to a given topic, you can of course expect to find it somewhere
in the Internet, but how do you find it? Traditionally, people prefer a library, or even better …

[HTML][HTML] Open source molecular modeling

S Pirhadi, J Sunseri, DR Koes - Journal of Molecular Graphics and …, 2016 - Elsevier
The success of molecular modeling and computational chemistry efforts are, by definition,
dependent on quality software applications. Open source software development provides …

Towards a gold standard: regarding quality in public domain chemistry databases and approaches to improving the situation

AJ Williams, S Ekins, V Tkachenko - Drug discovery today, 2012 - Elsevier
In recent years there has been a dramatic increase in the number of freely accessible online
databases serving the chemistry community. The internet provides chemistry data that can …

Cheminformatics to characterize pharmacologically active natural products

JL Medina-Franco, FI Saldívar-González - Biomolecules, 2020 - mdpi.com
Natural products have a significant role in drug discovery. Natural products have distinctive
chemical structures that have contributed to identifying and developing drugs for different …

NBO 6.0: Natural bond orbital analysis program

ED Glendening, CR Landis… - Journal of computational …, 2013 - Wiley Online Library
We describe principal features of the newly released version, NBO 6.0, of the natural bond
orbital analysis program, that provides novel “link‐free” interactivity with host electronic …

Browsable structure-activity datasets

MA Johnson - Advances in Molecular Similarity, 1998 - books.google.com
Ever-larger structure—activity datasets are motivating the need for ways of rapidly finding
and validating interesting structure—activity patterns. Patterns among chemical and …

Chemical name to structure: OPSIN, an open source solution

DM Lowe, PT Corbett, P Murray-Rust, RC Glen - 2011 - ACS Publications
We have produced an open source, freely available, algorithm (Open Parser for Systematic
IUPAC Nomenclature, OPSIN) that interprets the majority of organic chemical nomenclature …