fconv: Format conversion, manipulation and feature computation of molecular data
G Neudert, G Klebe - Bioinformatics, 2011 - academic.oup.com
fconv is a program intended for parsing and manipulating multiple aspects and properties of
molecular data. Up to now, it has been developed and extensively tested for 3 years. It has …
molecular data. Up to now, it has been developed and extensively tested for 3 years. It has …
Progress on open chemoinformatic tools for expanding and exploring the chemical space
JL Medina-Franco, N Sánchez-Cruz… - Journal of Computer …, 2022 - Springer
The concept of chemical space is a cornerstone in chemoinformatics, and it has broad
conceptual and practical applicability in many areas of chemistry, including drug design and …
conceptual and practical applicability in many areas of chemistry, including drug design and …
ClassyFire: automated chemical classification with a comprehensive, computable taxonomy
Y Djoumbou Feunang, R Eisner, C Knox… - Journal of …, 2016 - Springer
Background Scientists have long been driven by the desire to describe, organize, classify,
and compare objects using taxonomies and/or ontologies. In contrast to biology, geology …
and compare objects using taxonomies and/or ontologies. In contrast to biology, geology …
[引用][C] Encyclopedia of computational chemistry
A Horn, H Lanig - 1999 - Springer
If you need a good entry point to a given topic, you can of course expect to find it somewhere
in the Internet, but how do you find it? Traditionally, people prefer a library, or even better …
in the Internet, but how do you find it? Traditionally, people prefer a library, or even better …
[HTML][HTML] Open source molecular modeling
The success of molecular modeling and computational chemistry efforts are, by definition,
dependent on quality software applications. Open source software development provides …
dependent on quality software applications. Open source software development provides …
Towards a gold standard: regarding quality in public domain chemistry databases and approaches to improving the situation
In recent years there has been a dramatic increase in the number of freely accessible online
databases serving the chemistry community. The internet provides chemistry data that can …
databases serving the chemistry community. The internet provides chemistry data that can …
Cheminformatics to characterize pharmacologically active natural products
JL Medina-Franco, FI Saldívar-González - Biomolecules, 2020 - mdpi.com
Natural products have a significant role in drug discovery. Natural products have distinctive
chemical structures that have contributed to identifying and developing drugs for different …
chemical structures that have contributed to identifying and developing drugs for different …
NBO 6.0: Natural bond orbital analysis program
ED Glendening, CR Landis… - Journal of computational …, 2013 - Wiley Online Library
We describe principal features of the newly released version, NBO 6.0, of the natural bond
orbital analysis program, that provides novel “link‐free” interactivity with host electronic …
orbital analysis program, that provides novel “link‐free” interactivity with host electronic …
Browsable structure-activity datasets
MA Johnson - Advances in Molecular Similarity, 1998 - books.google.com
Ever-larger structure—activity datasets are motivating the need for ways of rapidly finding
and validating interesting structure—activity patterns. Patterns among chemical and …
and validating interesting structure—activity patterns. Patterns among chemical and …
Chemical name to structure: OPSIN, an open source solution
We have produced an open source, freely available, algorithm (Open Parser for Systematic
IUPAC Nomenclature, OPSIN) that interprets the majority of organic chemical nomenclature …
IUPAC Nomenclature, OPSIN) that interprets the majority of organic chemical nomenclature …