Unraveling the 3D genome: genomics tools for multiscale exploration
VI Risca, WJ Greenleaf - Trends in Genetics, 2015 - cell.com
A decade of rapid method development has begun to yield exciting insights into the 3D
architecture of the metazoan genome and the roles it may play in regulating transcription …
architecture of the metazoan genome and the roles it may play in regulating transcription …
Decoding the organization, dynamics, and function of the 4D genome
E Aboelnour, B Bonev - Developmental Cell, 2021 - cell.com
Understanding how complex cell-fate decisions emerge at the molecular level is a key
challenge in developmental biology. Despite remarkable progress in decoding the …
challenge in developmental biology. Despite remarkable progress in decoding the …
3D or not 3D: shaping the genome during development
J Glaser, S Mundlos - Cold Spring Harbor Perspectives …, 2022 - cshperspectives.cshlp.org
One of the most fundamental questions in developmental biology is how one fertilized cell
can give rise to a fully mature organism and how gene regulation governs this process …
can give rise to a fully mature organism and how gene regulation governs this process …
Understanding the 3D genome: emerging impacts on human disease
A Krumm, Z Duan - Seminars in cell & developmental biology, 2019 - Elsevier
Recent burst of new technologies that allow for quantitatively delineating chromatin structure
has greatly expanded our understanding of how the genome is organized in the three …
has greatly expanded our understanding of how the genome is organized in the three …
The second decade of 3C technologies: detailed insights into nuclear organization
A Denker, W De Laat - Genes & development, 2016 - genesdev.cshlp.org
The relevance of three-dimensional (3D) genome organization for transcriptional regulation
and thereby for cellular fate at large is now widely accepted. Our understanding of the …
and thereby for cellular fate at large is now widely accepted. Our understanding of the …
The role of 3D genome organization in disease: from compartments to single nucleotides
A Chakraborty, F Ay - Seminars in cell & developmental biology, 2019 - Elsevier
Since the advent of the chromosome conformation capture technology, our understanding of
the human genome 3D organization has grown rapidly and we now know that human …
the human genome 3D organization has grown rapidly and we now know that human …
In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization
E Oberbeckmann, K Quililan, P Cramer… - Nature Genetics, 2024 - nature.com
Eukaryotic genomes are organized into chromatin domains. The molecular mechanisms
driving the formation of these domains are difficult to dissect in vivo and remain poorly …
driving the formation of these domains are difficult to dissect in vivo and remain poorly …
Organization and function of the 3D genome
Understanding how chromatin is organized within the nucleus and how this 3D architecture
influences gene regulation, cell fate decisions and evolution are major questions in cell …
influences gene regulation, cell fate decisions and evolution are major questions in cell …
[HTML][HTML] The era of 3D and spatial genomics
BAM Bouwman, N Crosetto, M Bienko - Trends in genetics, 2022 - cell.com
Over a decade ago the advent of high-throughput chromosome conformation capture (Hi-C)
sparked a new era of 3D genomics. Since then the number of methods for mapping the 3D …
sparked a new era of 3D genomics. Since then the number of methods for mapping the 3D …