Similarities among receptor pockets and among compounds: analysis and application to in silico ligand screening
Y Fukunishi, Y Mikami, H Nakamura - Journal of Molecular Graphics and …, 2005 - Elsevier
We developed a new method to evaluate the distances and similarities between receptor
pockets or chemical compounds based on a multi-receptor versus multi-ligand docking …
pockets or chemical compounds based on a multi-receptor versus multi-ligand docking …
TTD: Therapeutic Target Database describing target druggability information
Y Zhou, Y Zhang, D Zhao, X Yu, X Shen… - Nucleic acids …, 2024 - academic.oup.com
Target discovery is one of the essential steps in modern drug development, and the
identification of promising targets is fundamental for developing first-in-class drug. A variety …
identification of promising targets is fundamental for developing first-in-class drug. A variety …
Integrating structure-based and ligand-based approaches for computational drug design
GL Wilson, MA Lill - Future medicinal chemistry, 2011 - Taylor & Francis
Methods utilized in computer-aided drug design can be classified into two major categories:
structure based and ligand based, using information on the structure of the protein or on the …
structure based and ligand based, using information on the structure of the protein or on the …
Recent advances and method development for drug target identification
Although it is commonly recognized that most drugs cause inhibition or activation of function
by physically binding to one or more gene products, the direct interactions of bioactive small …
by physically binding to one or more gene products, the direct interactions of bioactive small …
[HTML][HTML] Pathway-based screening strategy for multitarget inhibitors of diverse proteins in metabolic pathways
KC Hsu, WC Cheng, YF Chen, WC Wang… - PLoS computational …, 2013 - journals.plos.org
Many virtual screening methods have been developed for identifying single-target inhibitors
based on the strategy of “one–disease, one–target, one–drug”. The hit rates of these …
based on the strategy of “one–disease, one–target, one–drug”. The hit rates of these …
Computer aided drug design for multi-target drug design: SAR/QSAR, molecular docking and pharmacophore methods
A Abdolmaleki, JB Ghasemi, F Ghasemi - Current drug targets, 2017 - ingentaconnect.com
Multi-target drugs against particular multiple targets get better protection, resistance profiles
and curative influence by cooperative rules of a key beneficial target with resistance …
and curative influence by cooperative rules of a key beneficial target with resistance …
[HTML][HTML] Large-scale prediction of drug-target interaction: a data-centric review
The prediction of drug-target interactions (DTIs) is of extraordinary significance to modern
drug discovery in terms of suggesting new drug candidates and repositioning old drugs …
drug discovery in terms of suggesting new drug candidates and repositioning old drugs …
[HTML][HTML] Network-based methods for prediction of drug-target interactions
Drug-target interaction (DTI) is the basis of drug discovery. However, it is time-consuming
and costly to determine DTIs experimentally. Over the past decade, various computational …
and costly to determine DTIs experimentally. Over the past decade, various computational …
[HTML][HTML] Prediction of drug-target interactions for drug repositioning only based on genomic expression similarity
K Wang, J Sun, S Zhou, C Wan, S Qin… - PLoS computational …, 2013 - journals.plos.org
Small drug molecules usually bind to multiple protein targets or even unintended off-targets.
Such drug promiscuity has often led to unwanted or unexplained drug reactions, resulting in …
Such drug promiscuity has often led to unwanted or unexplained drug reactions, resulting in …
Predicting molecular interactions in silico: I. A guide to pharmacophore identification and its applications to drug design
O Dror, A Shulman-Peleg, R Nussinov… - Current medicinal …, 2004 - ingentaconnect.com
A major goal in contemporary drug design is to develop new ligands with high affinity of
binding toward a given protein receptor. Pharmacophore, which is the three-dimensional …
binding toward a given protein receptor. Pharmacophore, which is the three-dimensional …