Statistical epistasis is a generic feature of gene regulatory networks

AB Gjuvsland, BJ Hayes, SW Omholt, O Carlborg - Genetics, 2007 - academic.oup.com
Functional dependencies between genes are a defining characteristic of gene networks
underlying quantitative traits. However, recent studies show that the proportion of the genetic …

Epistasis and quantitative traits: using model organisms to study gene–gene interactions

TFC Mackay - Nature Reviews Genetics, 2014 - nature.com
The role of epistasis in the genetic architecture of quantitative traits is controversial, despite
the biological plausibility that nonlinear molecular interactions underpin the genotype …

[HTML][HTML] Dissecting genetic networks underlying complex phenotypes: the theoretical framework

F Zhang, HQ Zhai, AH Paterson, JL Xu, YM Gao… - PloS one, 2011 - journals.plos.org
Great progress has been made in genetic dissection of quantitative trait variation during the
past two decades, but many studies still reveal only a small fraction of quantitative trait loci …

[HTML][HTML] From classical genetics to quantitative genetics to systems biology: modeling epistasis

DL Aylor, ZB Zeng - PLoS genetics, 2008 - journals.plos.org
Gene expression data has been used in lieu of phenotype in both classical and quantitative
genetic settings. These two disciplines have separate approaches to measuring and …

On the classification of epistatic interactions

H Gao, JM Granka, MW Feldman - Genetics, 2010 - academic.oup.com
Modern genomewide association studies are characterized by the problem of “missing
heritability.” Epistasis, or genetic interaction, has been suggested as a possible explanation …

[PDF][PDF] Are interactions between cis-regulatory variants evidence for biological epistasis or statistical artifacts?

AE Fish, JA Capra, WS Bush - The American Journal of Human Genetics, 2016 - cell.com
The importance of epistasis—or statistical interactions between genetic variants—to the
development of complex disease in humans has been controversial. Genome-wide …

Influence of gene interaction on complex trait variation with multilocus models

A Mäki-Tanila, WG Hill - Genetics, 2014 - academic.oup.com
Although research effort is being expended into determining the importance of epistasis and
epistatic variance for complex traits, there is considerable controversy about their …

Competition between recombination and epistasis can cause a transition from allele to genotype selection

RA Neher, BI Shraiman - Proceedings of the National …, 2009 - National Acad Sciences
Biochemical and regulatory interactions central to biological networks are expected to cause
extensive genetic interactions or epistasis affecting the heritability of complex traits and the …

Modularity and interactions in the genetics of gene expression

O Litvin, HC Causton, BJ Chen… - Proceedings of the …, 2009 - National Acad Sciences
Understanding the effect of genetic sequence variation on phenotype is a major challenge
that lies at the heart of genetics. We developed GOLPH (GenOmic Linkage to PHenotype), a …

Epistasis from functional dependence of fitness on underlying traits

HC Chiu, CJ Marx, D Segre - Proceedings of the …, 2012 - royalsocietypublishing.org
Epistasis between mutations in two genes is thought to reflect an interdependence of their
functions. While sometimes epistasis is predictable using mechanistic models, its roots …