Resolving plant development in space and time with single-cell genomics

TM Nolan, R Shahan - Current opinion in plant biology, 2023 - Elsevier
Single-cell genomics technologies are ushering in a new research era. In this review, we
summarize the benefits and current challenges of using these technologies to probe the …

Single-cell genomics in plants: current state, future directions, and hurdles to overcome

JT Cuperus - Plant Physiology, 2022 - academic.oup.com
Single-cell genomics has the potential to revolutionize the study of plant development and
tissue-specific responses to environmental stimuli by revealing heretofore unknown players …

Potentials of single-cell genomics in deciphering cellular phenotypes

A Shojaee, M Saavedra, SC Huang - Current opinion in plant biology, 2021 - Elsevier
Single-cell genomics, particularly single-cell transcriptome profiling by RNA sequencing
have transformed the possibilities to relate genes to functions, structures, and eventually …

Single-cell analysis opens a goldmine for plant functional studies

X Xu, D Jackson - Current Opinion in Biotechnology, 2023 - Elsevier
Highlights•Plant biologists embrace single-cell technology in functional studies.•Cell-type-
specific genes and regulatory elements drive the development.•Key developmental …

Single-cell genomics revolutionizes plant development studies across scales

M Zhu, IW Taylor, PN Benfey - Development, 2022 - journals.biologists.com
Understanding the development of tissues, organs and entire organisms through the lens of
single-cell genomics has revolutionized developmental biology. Although single-cell …

Single-cell transcriptomics reveal heterogeneity in plant responses to the environment: a focus on biotic and abiotic interactions

R Tenorio Berrío, M Dubois - Journal of Experimental Botany, 2024 - academic.oup.com
Environmental cues, from biotic or abiotic origin, are major factors influencing plant growth
and productivity. Interactions with biotic (eg symbionts and pathogens) and abiotic (eg …

The biology of time: dynamic responses of cell types to developmental, circadian and environmental cues

J Swift, K Greenham, JR Ecker, GM Coruzzi… - The Plant …, 2022 - Wiley Online Library
As sessile organisms, plants are finely tuned to respond dynamically to developmental,
circadian and environmental cues. Genome‐wide studies investigating these types of cues …

[HTML][HTML] Single-cell transcriptomics: a high-resolution avenue for plant functional genomics

C Rich-Griffin, A Stechemesser, J Finch, E Lucas… - Trends in plant …, 2020 - cell.com
Plant function is the result of the concerted action of single cells in different tissues.
Advances in RNA-seq technologies and tissue processing allow us now to capture …

[PDF][PDF] scPlant: a versatile framework for single-cell transcriptomic data analysis in plants

S Cao, Z He, R Chen, Y Luo, LY Fu, X Zhou, C He… - Plant …, 2023 - cell.com
Single-cell transcriptomics has been fully embraced in plant biological research and is
revolutionizing our understanding of plant growth, development, and responses to external …

Advances and opportunities in single-cell transcriptomics for plant research

C Seyfferth, J Renema, JR Wendrich… - Annual Review of …, 2021 - annualreviews.org
Single-cell approaches are quickly changing our view on biological systems by increasing
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …