Resolving plant development in space and time with single-cell genomics
Single-cell genomics technologies are ushering in a new research era. In this review, we
summarize the benefits and current challenges of using these technologies to probe the …
summarize the benefits and current challenges of using these technologies to probe the …
Single-cell genomics in plants: current state, future directions, and hurdles to overcome
JT Cuperus - Plant Physiology, 2022 - academic.oup.com
Single-cell genomics has the potential to revolutionize the study of plant development and
tissue-specific responses to environmental stimuli by revealing heretofore unknown players …
tissue-specific responses to environmental stimuli by revealing heretofore unknown players …
Potentials of single-cell genomics in deciphering cellular phenotypes
A Shojaee, M Saavedra, SC Huang - Current opinion in plant biology, 2021 - Elsevier
Single-cell genomics, particularly single-cell transcriptome profiling by RNA sequencing
have transformed the possibilities to relate genes to functions, structures, and eventually …
have transformed the possibilities to relate genes to functions, structures, and eventually …
Single-cell analysis opens a goldmine for plant functional studies
Highlights•Plant biologists embrace single-cell technology in functional studies.•Cell-type-
specific genes and regulatory elements drive the development.•Key developmental …
specific genes and regulatory elements drive the development.•Key developmental …
Single-cell genomics revolutionizes plant development studies across scales
Understanding the development of tissues, organs and entire organisms through the lens of
single-cell genomics has revolutionized developmental biology. Although single-cell …
single-cell genomics has revolutionized developmental biology. Although single-cell …
Single-cell transcriptomics reveal heterogeneity in plant responses to the environment: a focus on biotic and abiotic interactions
R Tenorio Berrío, M Dubois - Journal of Experimental Botany, 2024 - academic.oup.com
Environmental cues, from biotic or abiotic origin, are major factors influencing plant growth
and productivity. Interactions with biotic (eg symbionts and pathogens) and abiotic (eg …
and productivity. Interactions with biotic (eg symbionts and pathogens) and abiotic (eg …
The biology of time: dynamic responses of cell types to developmental, circadian and environmental cues
As sessile organisms, plants are finely tuned to respond dynamically to developmental,
circadian and environmental cues. Genome‐wide studies investigating these types of cues …
circadian and environmental cues. Genome‐wide studies investigating these types of cues …
[HTML][HTML] Single-cell transcriptomics: a high-resolution avenue for plant functional genomics
Plant function is the result of the concerted action of single cells in different tissues.
Advances in RNA-seq technologies and tissue processing allow us now to capture …
Advances in RNA-seq technologies and tissue processing allow us now to capture …
[PDF][PDF] scPlant: a versatile framework for single-cell transcriptomic data analysis in plants
S Cao, Z He, R Chen, Y Luo, LY Fu, X Zhou, C He… - Plant …, 2023 - cell.com
Single-cell transcriptomics has been fully embraced in plant biological research and is
revolutionizing our understanding of plant growth, development, and responses to external …
revolutionizing our understanding of plant growth, development, and responses to external …
Advances and opportunities in single-cell transcriptomics for plant research
C Seyfferth, J Renema, JR Wendrich… - Annual Review of …, 2021 - annualreviews.org
Single-cell approaches are quickly changing our view on biological systems by increasing
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …