Integration of genomics into rice breeding

S Fukuoka, K Ebana, T Yamamoto, M Yano - Rice, 2010 - Springer
One of the major challenges in genetics has been to identify the nucleotide polymorphisms
responsible for phenotypic variation. Through intensive analysis, several major quantitative …

Detection and molecular cloning of genes underlying quantitative phenotypic variations in rice

T Yamamoto, M Yano - Rice Biology in the Genomics Era, 2008 - Springer
Sequencing of the entire rice genome has made remarkable progress (IRGSP 2005). This
sequence information has provided new tools for genetics and has created a new paradigm …

Genomics-assisted allele mining and its integration into rice breeding

T Yamamoto, Y Uga, M Yano - … of Plant Genetic Resources: Volume 2 …, 2014 - Springer
Understanding the association between nucleotide changes and phenotypic changes is
necessary for germplasm enhancement but has been a significant challenge in the …

Naturally occurring allelic variations as a new resource for functional genomics in rice

M Yano - Rice Genetics IV, 2001 - World Scientific
Recent progress in rice genome analysis has made it possible to analyze naturally occurring
allelic variation underlying complex traits. Using heading date as a model for complex traits …

Critical considerations for molecular breeding in rice

BCY Collard, C Raghavan… - ORYZA-An International …, 2016 - indianjournals.com
The last 20 years has seen a tremendous growth in molecular genetics research and
breeding rice. While there have been some outstanding successful examples of rice …

Features of the expressed sequences revealed by a large‐scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63

J Zhang, Q Feng, C Jin, D Qiu, L Zhang, K Xie… - The Plant …, 2005 - Wiley Online Library
The indica subspecies of cultivated rice occupies the largest area of rice production in the
world. However, a systematic analysis of cDNA sequences from the indica subspecies has …

Development of genomics-based genotyping platforms and their applications in rice breeding

H Chen, H He, F Zhou, H Yu, XW Deng - Current opinion in plant biology, 2013 - Elsevier
Breeding by design has been an aspiration of researchers in the plant sciences for a
decade. With the rapid development of genomics-based genotyping platforms and available …

Resequencing rice genomes: an emerging new era of rice genomics

X Huang, T Lu, B Han - Trends in Genetics, 2013 - cell.com
Rice is a model system for crop genomics studies. Much of the early work on rice genomics
focused on analyzing genome-wide genetic variation to further understand rice gene …

Towards the understanding of complex traits in rice: substantially or superficially?

T Yamamoto, J Yonemaru, M Yano - DNA research, 2009 - academic.oup.com
Completion of the genome analysis followed by extensive comprehensive studies on a
variety of genes and gene families of rice (Oryza sativa) resulted in rapid accumulation of …

Rice molecular breeding laboratories in the genomics era: current status and future considerations

BCY Collard, CM Vera Cruz, KL McNally… - … journal of plant …, 2008 - Wiley Online Library
Using DNA markers in plant breeding with marker‐assisted selection (MAS) could greatly
improve the precision and efficiency of selection, leading to the accelerated development of …