[HTML][HTML] Effective drug combinations in breast, colon and pancreatic cancer cells

P Jaaks, EA Coker, DJ Vis, O Edwards, EF Carpenter… - Nature, 2022 - nature.com
Combinations of anti-cancer drugs can overcome resistance and provide new treatments,.
The number of possible drug combinations vastly exceeds what could be tested clinically …

TCGA-assembler: open-source software for retrieving and processing TCGA data

Y Zhu, P Qiu, Y Ji - Nature methods, 2014 - nature.com
To the Editor: The Cancer Genome Atlas (TCGA, https://tcgadata. nci. nih. gov/tcga/) has
been generating multimodal genomics, epigenomics and proteomics data for thousands of …

A molecular signature of metastasis in primary solid tumors

S Ramaswamy, KN Ross, ES Lander, TR Golub - Nature genetics, 2003 - nature.com
Metastasis is the principal event leading to death in individuals with cancer, yet its molecular
basis is poorly understood 1. To explore the molecular differences between human primary …

A pathology atlas of the human cancer transcriptome

M Uhlen, C Zhang, S Lee, E Sjöstedt, L Fagerberg… - Science, 2017 - science.org
INTRODUCTION Cancer is a leading cause of death worldwide, and there is great need to
define the molecular mechanisms driving the development and progression of individual …

Genomic hallmarks of localized, non-indolent prostate cancer

M Fraser, VY Sabelnykova, TN Yamaguchi, LE Heisler… - Nature, 2017 - nature.com
Prostate tumours are highly variable in their response to therapies, but clinically available
prognostic factors can explain only a fraction of this heterogeneity. Here we analysed 200 …

Deep whole-genome ctDNA chronology of treatment-resistant prostate cancer

C Herberts, M Annala, J Sipola, SWS Ng, XE Chen… - Nature, 2022 - nature.com
Circulating tumour DNA (ctDNA) in blood plasma is an emerging tool for clinical cancer
genotyping and longitudinal disease monitoring. However, owing to past emphasis on …

The patterns and dynamics of genomic instability in metastatic pancreatic cancer

PJ Campbell, S Yachida, LJ Mudie, PJ Stephens… - Nature, 2010 - nature.com
Pancreatic cancer is an aggressive malignancy with a five-year mortality of 97–98%, usually
due to widespread metastatic disease. Previous studies indicate that this disease has a …

Implementing genome-driven oncology

DM Hyman, BS Taylor, J Baselga - Cell, 2017 - cell.com
Early successes in identifying and targeting individual oncogenic drivers, together with the
increasing feasibility of sequencing tumor genomes, have brought forth the promise of …

A view on drug resistance in cancer

N Vasan, J Baselga, DM Hyman - Nature, 2019 - nature.com
The problem of resistance to therapy in cancer is multifaceted. Here we take a reductionist
approach to define and separate the key determinants of drug resistance, which include …

Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens

Y Wang, JL Fan, JC Melms, AD Amin, Y Georgis… - Nature …, 2023 - nature.com
Single-cell genomics enables dissection of tumor heterogeneity and molecular
underpinnings of drug response at an unprecedented resolution,,,,,,,,,–. However, broad …