[HTML][HTML] Genome-wide functional analysis of the cotton transcriptome by creating an integrated EST database

F Xie, G Sun, JW Stiller, B Zhang - PloS one, 2011 - journals.plos.org
A total of 28,432 unique contigs (25,371 in consensus contigs and 3,061 as singletons) were
assembled from all 268,786 cotton ESTs currently available. Several in silico approaches …

CottonMD: a multi-omics database for cotton biological study

Z Yang, J Wang, Y Huang, S Wang, L Wei… - Nucleic Acids …, 2023 - academic.oup.com
Cotton is an important economic crop, and many loci for important traits have been
identified, but it remains challenging and time-consuming to identify candidate or causal …

[HTML][HTML] CottonFGD: an integrated functional genomics database for cotton

T Zhu, C Liang, Z Meng, G Sun, Z Meng, S Guo… - BMC plant biology, 2017 - Springer
Abstract Background Cotton (Gossypium spp.) is the most important fiber and oil crop in the
world. With the emergence of huge-omics data sets, it is essential to have an integrated …

[HTML][HTML] Multi-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton

K Wang, D Wang, X Zheng, A Qin, J Zhou… - Nature …, 2019 - nature.com
Cotton is an important natural fiber crop, however, its comprehensive and high-resolution
gene map is lacking. Here we integrate four complementary high-throughput techniques …

[PDF][PDF] SIFGD: Setaria italica functional genomics database

Q You, L Zhang, X Yi, Z Zhang, W Xu, Z Su - Molecular plant, 2015 - cell.com
Foxtail millet (Setaria italica) is a member of the Poaceae grasses that was initially
domesticated from the wild species of S. viridis in Northern China over 8700 years ago …

[HTML][HTML] Transcriptome Sequencing of Mung Bean (Vigna radiate L.) Genes and the Identification of EST-SSR Markers

H Chen, L Wang, S Wang, C Liu, MW Blair, X Cheng - PloS one, 2015 - journals.plos.org
Mung bean (Vigna radiate (L.) Wilczek) is an important traditional food legume crop, with
high economic and nutritional value. It is widely grown in China and other Asian countries …

[HTML][HTML] Deep transcriptome analysis reveals reactive oxygen species (ROS) network evolution, response to abiotic stress, and regulation of fiber development in …

Y Xu, RO Magwanga, X Cai, Z Zhou, X Wang… - International journal of …, 2019 - mdpi.com
Reactive oxygen species (ROS) are important molecules in the plant, which are involved in
many biological processes, including fiber development and adaptation to abiotic stress in …

[HTML][HTML] Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton

JM Lacape, M Claverie, RO Vidal, MF Carazzolle… - PloS one, 2012 - journals.plos.org
Cotton (Gossypium) fiber is the most prevalent natural product used in the textile industry.
The two major cultivated species, G. hirsutum (Gh) and G. barbadense (Gb), are …

[HTML][HTML] Generation, Annotation and Analysis of First Large-Scale Expressed Sequence Tags from Developing Fiber of Gossypium barbadense L

D Yuan, L Tu, X Zhang - PLoS One, 2011 - journals.plos.org
Background Cotton fiber is the world's leading natural fiber used in the manufacture of
textiles. Gossypium is also the model plant in the study of polyploidization, evolution, cell …

[HTML][HTML] CottonGen: the community database for cotton genomics, genetics, and breeding research

J Yu, S Jung, CH Cheng, T Lee, P Zheng, K Buble… - Plants, 2021 - mdpi.com
Over the last eight years, the volume of whole genome, gene expression, SNP genotyping,
and phenotype data generated by the cotton research community has exponentially …