WheatOmics: A platform combining multiple omics data to accelerate functional genomics studies in wheat

S Ma, M Wang, J Wu, W Guo, Y Chen, G Li, Y Wang… - Molecular plant, 2021 - cell.com
Mold-breaking progress in whole-genome sequencing and rapid accumulation of multi-
omics data have revolutionized the research strategies of functional genomics in wheat …

WheatExp: an RNA-seq expression database for polyploid wheat

S Pearce, H Vazquez-Gross, SY Herin, D Hane… - BMC plant biology, 2015 - Springer
Background For functional genomics studies, it is important to understand the dynamic
expression profiles of transcribed genes in different tissues, stages of development and in …

The defence‐associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias

JJ Powell, TL Fitzgerald, J Stiller… - Plant biotechnology …, 2017 - Wiley Online Library
Bread wheat (Triticum aestivum L.) is an allopolyploid species containing three ancestral
genomes. Therefore, three homoeologous copies exist for the majority of genes in the wheat …

Single-molecule real-time transcript sequencing facilitates common wheat genome annotation and grain transcriptome research

L Dong, H Liu, J Zhang, S Yang, G Kong, JSC Chu… - BMC genomics, 2015 - Springer
Background The large and complex hexaploid genome has greatly hindered genomics
studies of common wheat (Triticum aestivum, AABBDD). Here, we investigated transcripts in …

Combining a new exome capture panel with an effective varBScore algorithm accelerates BSA-based gene cloning in wheat

C Dong, L Zhang, Z Chen, C Xia, Y Gu… - Frontiers in Plant …, 2020 - frontiersin.org
The discovery of functional genes underlying agronomic traits is of great importance for
wheat improvement. Here we designed a new wheat exome capture probe panel based on …

SoyOmics: a deeply integrated database on soybean multi-omics

Y Liu, Y Zhang, X Liu, Y Shen, D Tian, X Yang, S Liu… - Molecular Plant, 2023 - cell.com
As one of the most important crops to supply the majority of plant oil and protein for the
whole world, soybean is facing an increasing global demand. The reference genome of …

A wheat integrative regulatory network from large-scale complementary functional datasets enables trait-associated gene discovery for crop improvement

Y Chen, Y Guo, P Guan, Y Wang, X Wang, Z Wang… - Molecular Plant, 2023 - cell.com
Gene regulation is central to all aspects of organism growth, and understanding it using
large-scale functional datasets can provide a whole view of biological processes controlling …

Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

A large‐scale whole‐exome sequencing mutant resource for functional genomics in wheat

H Xiong, H Guo, M Fu, Y Xie, L Zhao… - Plant Biotechnology …, 2023 - Wiley Online Library
Hexaploid wheat (Triticum aestivum), a major staple crop, has a remarkably large genome
of~ 14.4 Gb (containing 106 913 high‐confidence [HC] and 159 840 low‐confidence [LC] …

Asymmetric gene expression and cell-type-specific regulatory networks in the root of bread wheat revealed by single-cell multiomics analysis

L Zhang, C He, Y Lai, Y Wang, L Kang, A Liu, C Lan… - Genome biology, 2023 - Springer
Background Homoeologs are defined as homologous genes resulting from allopolyploidy.
Bread wheat, Triticum aestivum, is an allohexaploid species with many homoeologs …