A robust platform for chemical genomics in bacterial systems

S French, C Mangat, A Bharat, JP Côté… - Molecular biology of …, 2016 - Am Soc Cell Biol
While genetic perturbation has been the conventional route to probing bacterial systems,
small molecules are showing great promise as probes for cellular complexity. Indeed …

Systems-level chemical biology to accelerate antibiotic drug discovery

MA Farha, S French, ED Brown - Accounts of Chemical Research, 2021 - ACS Publications
Conspectus Drug-resistant bacterial infections pose an imminent and growing threat to
public health. The discovery and development of new antibiotics of novel chemical class and …

[HTML][HTML] Chemical genomic approaches to study model microbes

CA Barker, MA Farha, ED Brown - Chemistry & biology, 2010 - cell.com
Recent genome-scale analyses of genetic interactions in model microbes have revealed the
inherent functional organization of the cell as a dense network of highly interconnected …

[HTML][HTML] Phenotypic landscape of a bacterial cell

RJ Nichols, S Sen, YJ Choo, P Beltrao, M Zietek… - Cell, 2011 - cell.com
The explosion of sequence information in bacteria makes developing high-throughput, cost-
effective approaches to matching genes with phenotypes imperative. Using E. coli as proof …

High-throughput approaches to understanding gene function and mapping network architecture in bacteria

AR Brochado, A Typas - Current opinion in microbiology, 2013 - Elsevier
Advances in sequencing technology have provided an unprecedented view of bacterial
diversity, along with a daunting number of novel genes. Within this new reality lies the …

[HTML][HTML] Parallel Mapping of Antibiotic Resistance Alleles in Escherichia coli

SJ Weiss, TJ Mansell, P Mortazavi, R Knight, RT Gill - PLoS One, 2016 - journals.plos.org
Chemical genomics expands our understanding of microbial tolerance to inhibitory
chemicals, but its scope is often limited by the throughput of genome-scale library …

Systematic discovery of drug interaction mechanisms

G Chevereau, T Bollenbach - Molecular systems biology, 2015 - embopress.org
Drug combinations are increasingly important in disease treatments, for combating drug
resistance, and for elucidating fundamental relationships in cell physiology. When drugs are …

Systems-level antimicrobial drug and drug synergy discovery

T Roemer, C Boone - Nature chemical biology, 2013 - nature.com
Here, we review the'target-centric'genomic strategy to antimicrobial discovery and share our
perspective on identification, validation and prioritization of potential antimicrobial drug …

[HTML][HTML] Chemical probes of Escherichia coli uncovered through chemical-chemical interaction profiling with compounds of known biological activity

MA Farha, ED Brown - Chemistry & biology, 2010 - cell.com
While cell-based screens have considerable power in identifying new chemical probes of
biological systems and leads for new drugs, a major challenge to the utility of such …

Compatibility of evolutionary responses to constituent antibiotics drive resistance evolution to drug pairs

LJ Jahn, D Simon, M Jensen… - Molecular biology …, 2021 - academic.oup.com
Antibiotic combinations are considered a relevant strategy to tackle the global antibiotic
resistance crisis since they are believed to increase treatment efficacy and reduce …