Transcription factories are nuclear subcompartments that remain in the absence of transcription

JA Mitchell, P Fraser - Genes & development, 2008 - genesdev.cshlp.org
Nascent transcription occurs at nuclear foci of concentrated, hyperphosphorylated RNA
polymerase II (RNAPII). We investigate RNAPII localization, distal gene coassociation, and …

Transcription factories in the context of the nuclear and genome organization

SV Razin, AA Gavrilov, A Pichugin… - Nucleic acids …, 2011 - academic.oup.com
In the eukaryotic nucleus, genes are transcribed in transcription factories. In the present
review, we re-evaluate the models of transcription factories in the light of recent and older …

Active genes dynamically colocalize to shared sites of ongoing transcription

CS Osborne, L Chakalova, KE Brown, D Carter… - Nature …, 2004 - nature.com
The intranuclear position of many genes has been correlated with their activity state,
suggesting that migration to functional subcompartments may influence gene expression …

Transcription factories: gene expression in unions?

H Sutherland, WA Bickmore - Nature Reviews Genetics, 2009 - nature.com
Transcription is a fundamental step in gene expression, yet it remains poorly understood at a
cellular level. Visualization of transcription sites and active genes has led to the suggestion …

[HTML][HTML] Size-dependent increase in RNA polymerase II initiation rates mediates gene expression scaling with cell size

XM Sun, A Bowman, M Priestman, F Bertaux… - Current Biology, 2020 - cell.com
Cell size varies during the cell cycle and in response to external stimuli. This requires the
tight coordination, or" scaling," of mRNA and protein quantities with the cell volume in order …

A protein phosphatase functions to recycle RNA polymerase II

H Cho, TK Kim, H Mancebo, WS Lane… - Genes & …, 1999 - genesdev.cshlp.org
Transcription is regulated by the state of phosphorylation of a heptapeptide repeat known as
the carboxy-terminal domain (CTD) present in the largest subunit of RNA polymerase II …

[HTML][HTML] Emerging roles of transcriptional enhancers in chromatin looping and promoter-proximal pausing of RNA polymerase II

H Meng, B Bartholomew - Journal of Biological Chemistry, 2018 - ASBMB
Initiation and regulation of transcription by RNA polymerase II (RNAPII) in eukaryotes rely on
the transcriptional regulatory elements. Promoters and enhancers share similar …

Structural perspectives on transcription in chromatin

S Sekine, H Ehara, T Kujirai, H Kurumizaka - Trends in Cell Biology, 2023 - cell.com
In eukaryotes, all genetic processes take place in the cell nucleus, where DNA is packaged
as chromatin in'beads-on-a-string'nucleosome arrays. RNA polymerase II (RNAPII) …

Spatial organization of transcribed eukaryotic genes

S Leidescher, J Ribisel, S Ullrich, Y Feodorova… - Nature cell …, 2022 - nature.com
Despite the well-established role of nuclear organization in the regulation of gene
expression, little is known about the reverse: how transcription shapes the spatial …

[HTML][HTML] Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation

DA Gilchrist, G Dos Santos, DC Fargo, B Xie, Y Gao… - Cell, 2010 - cell.com
Metazoan transcription is controlled through either coordinated recruitment of transcription
machinery to the gene promoter or regulated pausing of RNA polymerase II (Pol II) in early …