Stabilization of the SARS-CoV-2 receptor binding domain by protein core redesign and deep mutational scanning

AC Leonard, JJ Weinstein, PJ Steiner… - … design and selection, 2022 - academic.oup.com
Stabilizing antigenic proteins as vaccine immunogens or diagnostic reagents is a stringent
case of protein engineering and design as the exterior surface must maintain recognition by …

De novo design and Rosetta‐based assessment of high‐affinity antibody variable regions (Fv) against the SARS‐CoV‐2 spike receptor binding domain (RBD)

VS Boorla, R Chowdhury… - Proteins: Structure …, 2023 - Wiley Online Library
The continued emergence of new SARS‐CoV‐2 variants has accentuated the growing need
for fast and reliable methods for the design of potentially neutralizing antibodies (Abs) to …

[HTML][HTML] Computational approaches for development of engineered therapeutics against SARS-CoV-2

A Joshi, T Tripathi, SK Singh, AK Padhi - Biochemistry, 2022 - ACS Publications
The long-term side effects and potential development of resistance against existing drugs
make it critical to develop new therapies against COVID-19. However, a crucial barrier to …

[HTML][HTML] Unraveling the stability landscape of mutations in the SARS-CoV-2 receptor-binding domain

MR Smaoui, H Yahyaoui - Scientific Reports, 2021 - nature.com
The interaction between the receptor-binding domain (RBD) of the SARS-CoV-2 spike
glycoprotein and the ACE2 enzyme is believed to be the entry point of the virus into various …

[HTML][HTML] DINC-COVID: A webserver for ensemble docking with flexible SARS-CoV-2 proteins

S Hall-Swan, D Devaurs, MM Rigo, DA Antunes… - Computers in Biology …, 2021 - Elsevier
An unprecedented research effort has been undertaken in response to the ongoing COVID-
19 pandemic. This has included the determination of hundreds of crystallographic structures …

[HTML][HTML] Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding

TN Starr, AJ Greaney, SK Hilton, D Ellis, KHD Crawford… - cell, 2020 - cell.com
The receptor binding domain (RBD) of the SARS-CoV-2 spike glycoprotein mediates viral
attachment to ACE2 receptor and is a major determinant of host range and a dominant target …

[HTML][HTML] Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants

R Yin, JD Guest, G Taherzadeh… - PLoS Computational …, 2021 - journals.plos.org
The SARS-CoV-2 pandemic highlights the need for a detailed molecular understanding of
protective antibody responses. This is underscored by the emergence and spread of SARS …

A design strategy to generate a SARS‐CoV‐2 RBD vaccine that abrogates ACE2 binding and improves neutralizing antibody responses

C Ratswohl, C Vázquez García… - European Journal of …, 2023 - Wiley Online Library
The structure‐based design of antigens holds promise for developing vaccines with higher
efficacy and improved safety profiles. We postulate that abrogation of host receptor …

[HTML][HTML] Stability and expression of SARS-CoV-2 spike-protein mutations

KT Bæk, R Mehra, KP Kepp - Molecular and Cellular Biochemistry, 2023 - Springer
Protein fold stability likely plays a role in SARS-CoV-2 S-protein evolution, together with
ACE2 binding and antibody evasion. While few thermodynamic stability data are available …

[HTML][HTML] Structure-based dual affinity optimization of a SARS-CoV-1/2 cross-reactive single-domain antibody

T Sulea, J Baardsnes, M Stuible, N Rohani, A Tran… - PLoS …, 2022 - journals.plos.org
The SARS coronavirus 2 (SARS-CoV-2) spike (S) protein binding to the human ACE2
receptor is the molecular event that initiates viral entry into host cells and leads to infection …