Stabilization of the SARS-CoV-2 receptor binding domain by protein core redesign and deep mutational scanning
AC Leonard, JJ Weinstein, PJ Steiner… - … design and selection, 2022 - academic.oup.com
Stabilizing antigenic proteins as vaccine immunogens or diagnostic reagents is a stringent
case of protein engineering and design as the exterior surface must maintain recognition by …
case of protein engineering and design as the exterior surface must maintain recognition by …
De novo design and Rosetta‐based assessment of high‐affinity antibody variable regions (Fv) against the SARS‐CoV‐2 spike receptor binding domain (RBD)
VS Boorla, R Chowdhury… - Proteins: Structure …, 2023 - Wiley Online Library
The continued emergence of new SARS‐CoV‐2 variants has accentuated the growing need
for fast and reliable methods for the design of potentially neutralizing antibodies (Abs) to …
for fast and reliable methods for the design of potentially neutralizing antibodies (Abs) to …
[HTML][HTML] Computational approaches for development of engineered therapeutics against SARS-CoV-2
The long-term side effects and potential development of resistance against existing drugs
make it critical to develop new therapies against COVID-19. However, a crucial barrier to …
make it critical to develop new therapies against COVID-19. However, a crucial barrier to …
[HTML][HTML] Unraveling the stability landscape of mutations in the SARS-CoV-2 receptor-binding domain
MR Smaoui, H Yahyaoui - Scientific Reports, 2021 - nature.com
The interaction between the receptor-binding domain (RBD) of the SARS-CoV-2 spike
glycoprotein and the ACE2 enzyme is believed to be the entry point of the virus into various …
glycoprotein and the ACE2 enzyme is believed to be the entry point of the virus into various …
[HTML][HTML] DINC-COVID: A webserver for ensemble docking with flexible SARS-CoV-2 proteins
An unprecedented research effort has been undertaken in response to the ongoing COVID-
19 pandemic. This has included the determination of hundreds of crystallographic structures …
19 pandemic. This has included the determination of hundreds of crystallographic structures …
[HTML][HTML] Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding
The receptor binding domain (RBD) of the SARS-CoV-2 spike glycoprotein mediates viral
attachment to ACE2 receptor and is a major determinant of host range and a dominant target …
attachment to ACE2 receptor and is a major determinant of host range and a dominant target …
[HTML][HTML] Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants
The SARS-CoV-2 pandemic highlights the need for a detailed molecular understanding of
protective antibody responses. This is underscored by the emergence and spread of SARS …
protective antibody responses. This is underscored by the emergence and spread of SARS …
A design strategy to generate a SARS‐CoV‐2 RBD vaccine that abrogates ACE2 binding and improves neutralizing antibody responses
C Ratswohl, C Vázquez García… - European Journal of …, 2023 - Wiley Online Library
The structure‐based design of antigens holds promise for developing vaccines with higher
efficacy and improved safety profiles. We postulate that abrogation of host receptor …
efficacy and improved safety profiles. We postulate that abrogation of host receptor …
[HTML][HTML] Stability and expression of SARS-CoV-2 spike-protein mutations
Protein fold stability likely plays a role in SARS-CoV-2 S-protein evolution, together with
ACE2 binding and antibody evasion. While few thermodynamic stability data are available …
ACE2 binding and antibody evasion. While few thermodynamic stability data are available …
[HTML][HTML] Structure-based dual affinity optimization of a SARS-CoV-1/2 cross-reactive single-domain antibody
The SARS coronavirus 2 (SARS-CoV-2) spike (S) protein binding to the human ACE2
receptor is the molecular event that initiates viral entry into host cells and leads to infection …
receptor is the molecular event that initiates viral entry into host cells and leads to infection …
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