RepE: unsupervised representation learning for image enhancement in nonlinear optical microscopy

YJ Jhang, X Lin, SH Chia, WC Chen, IC Wu, MT Wu… - Optics Letters, 2023 - opg.optica.org
We present an unsupervised learning denoising method, RepE (representation and
enhancement), designed for nonlinear optical microscopy images, such as second harmonic …

Convolutional neural network transformer (CNNT) for fluorescence microscopy image denoising with improved generalization and fast adaptation

A Rehman, A Zhovmer, R Sato, Y Mukouyama… - Scientific Reports, 2024 - nature.com
Deep neural networks can improve the quality of fluorescence microscopy images. Previous
methods, based on Convolutional Neural Networks (CNNs), require time-consuming training …

Real-time image denoising of mixed Poisson–Gaussian noise in fluorescence microscopy images using ImageJ

V Mannam, Y Zhang, Y Zhu, E Nichols, Q Wang… - Optica, 2022 - opg.optica.org
Fluorescence microscopy imaging speed is fundamentally limited by the measurement
signal-to-noise ratio (SNR). To improve image SNR for a given image acquisition rate …

M-Denoiser: Unsupervised image denoising for real-world optical and electron microscopy data

X Chong, M Cheng, W Fan, Q Li, H Leung - Computers in Biology and …, 2023 - Elsevier
Real-world microscopy data have a large amount of noise due to the limited light/electron
that can be used to capture images. The noise of microscopy data is composed of signal …

Denoising of stimulated Raman scattering microscopy images via deep learning

B Manifold, E Thomas, AT Francis, AH Hill… - Biomedical optics …, 2019 - opg.optica.org
Stimulated Raman scattering (SRS) microscopy is a label-free quantitative chemical imaging
technique that has demonstrated great utility in biomedical imaging applications ranging …

Self-Supervised Image Denoising of Third Harmonic Generation Microscopic Images of Human Glioma Tissue by Transformer-based Blind Spot (TBS) Network

Y Wu, S Qiu, ML Groot, Z Zhang - IEEE Journal of Biomedical …, 2024 - ieeexplore.ieee.org
Third harmonic generation (THG) microscopy shows great potential for instant pathology of
brain tumor tissue during surgery. However, due to the maximal permitted exposure of laser …

Self-Supervised Denoising Under Variations Between Adjacent Slices for Fluorescence Microscopy Image Stacks

Q Luo, G Yang - 2024 IEEE International Symposium on …, 2024 - ieeexplore.ieee.org
Fluorescence microscopy is a critically important imaging technique for biological studies,
enabling researchers to vi-sualize cellular structures and processes with high resolution and …

Image denoising for fluorescence microscopy by supervised to self-supervised transfer learning

Y Wang, H Pinkard, E Khwaja, S Zhou, L Waller… - Optics …, 2021 - opg.optica.org
When using fluorescent microscopy to study cellular dynamics, trade-offs typically have to be
made between light exposure and quality of recorded image to balance the phototoxicity …

Low-dose imaging denoising with one pair of noisy images

D Yang, W Lv, J Zhang, H Chen, X Sun, S Lv, X Dai… - Optics …, 2023 - opg.optica.org
Low-dose imaging techniques have many important applications in diverse fields, from
biological engineering to materials science. Samples can be protected from phototoxicity or …

A poisson-gaussian denoising dataset with real fluorescence microscopy images

Y Zhang, Y Zhu, E Nichols, Q Wang… - Proceedings of the …, 2019 - openaccess.thecvf.com
Fluorescence microscopy has enabled a dramatic development in modern biology. Due to
its inherently weak signal, fluorescence microscopy is not only much noisier than …