[引用][C] Modelling protein-DNA interactions: bend and twist until it fits
M van Dijk - 2010 - Utrecht University
[图书][B] Aligning and modeling protein-DNA interfaces: Towards an understanding of protein-DNA binding specificity
TW Siggers - 2006 - search.proquest.com
Years of structural work characterizing protein-DNA complexes has provided tremendous
insight into the mechanisms of binding specificity. Currently, modeling approaches …
insight into the mechanisms of binding specificity. Currently, modeling approaches …
DNA Docking
MJE Sternberg, G Moont - Methods and Principles in Medicinal …, 2002 - Wiley Online Library
A description of many biological processes requires knowledge of the threedimensional
structure of macromolecular complexes. This structural information will provide insights into …
structure of macromolecular complexes. This structural information will provide insights into …
[引用][C] ParaDock-a Flexible DNA Rigid Protein Geometric Complementarity Based Docking Algorithm
I Banitt - 2010 - Tel Aviv University
Computational approaches for predicting the binding sites and understanding the recognition mechanism of protein–DNA complexes
MM Gromiha, R Nagarajan - Advances in protein chemistry and structural …, 2013 - Elsevier
Protein–DNA recognition plays an important role in the regulation of gene expression.
Understanding the influence of specific residues for protein–DNA interactions and the …
Understanding the influence of specific residues for protein–DNA interactions and the …
[引用][C] Intersection of simulative and experimental approaches for the investigation of natural and artificial DNA nanostructures
A Bonvin
Validation of a computational docking methodology to identify the non-covalent binding site of ligands to DNA
C Deligkaris, AT Ascone, KJ Sweeney… - Molecular …, 2014 - pubs.rsc.org
Despite the biomedical consequences of carcinogen–DNA interactions and the potential of
DNA as a drug target in medicinal chemistry, only a small number of studies have validated …
DNA as a drug target in medicinal chemistry, only a small number of studies have validated …
HDOCK update for modeling protein‐RNA/DNA complex structures
Protein‐nucleic acid interactions are involved in various cellular processes. Therefore,
determining the structures of protein‐nucleic acid complexes can provide insights into the …
determining the structures of protein‐nucleic acid complexes can provide insights into the …
[图书][B] Computational modelling of protein/protein and protein/DNA docking
G Moont - 2005 - search.proquest.com
The docking problem is to start with unbound conformations for the components of a
complex, and computationally model a near-native structure for the complex. This thesis …
complex, and computationally model a near-native structure for the complex. This thesis …