Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation

KE Price, TH Hampton, AH Gifford, EL Dolben… - Microbiome, 2013 - Springer
Background Cystic fibrosis (CF) is caused by inherited mutations in the cystic fibrosis
transmembrane conductance regulator gene and results in a lung environment that is highly …

Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis

FJ Whelan, AA Heirali, L Rossi, HR Rabin, MD Parkins… - PloS one, 2017 - journals.plos.org
Cystic fibrosis (CF) manifests in the lungs resulting in chronic microbial infection. Most
morbidity and mortality in CF is due to cycles of pulmonary exacerbations—episodes of …

Sputum microbiome temporal variability and dysbiosis in chronic obstructive pulmonary disease exacerbations: an analysis of the COPDMAP study

Z Wang, R Singh, BE Miller, R Tal-Singer, S Van Horn… - Thorax, 2018 - thorax.bmj.com
Background Recent studies suggest that lung microbiome dysbiosis, the disease associated
disruption of the lung microbial community, might play a key role in chronic obstructive …

Microbial communities in the respiratory tract of patients with interstitial lung disease

C Garzoni, SD Brugger, W Qi, S Wasmer, A Cusini… - Thorax, 2013 - thorax.bmj.com
Background Molecular methods based on phylogenetic differences in the 16S rRNA gene
are able to characterise the microbiota of the respiratory tract in health and disease …

Integrative microbiomics in bronchiectasis exacerbations

M Mac Aogain, JK Narayana, PY Tiew, NABM Ali… - Nature medicine, 2021 - nature.com
Bronchiectasis, a progressive chronic airway disease, is characterized by microbial
colonization and infection. We present an approach to the multi-biome that integrates …

Lung microbiota associations with clinical features of COPD in the SPIROMICS cohort

K Opron, LA Begley, JR Erb-Downward… - npj Biofilms and …, 2021 - nature.com
Chronic obstructive pulmonary disease (COPD) is heterogeneous in development,
progression, and phenotypes. Little is known about the lung microbiome, sampled by …

Immunity and bacterial colonisation in bronchiectasis

D Whitters, R Stockley - Thorax, 2012 - thorax.bmj.com
Background Non-cystic fibrosis bronchiectasis is characterised by irreversibly dilated
bronchi usually associated with chronic sputum production, bacterial colonisation of the …

The effect of long-term macrolide treatment on respiratory microbiota composition in non-cystic fibrosis bronchiectasis: an analysis from the randomised, double-blind …

GB Rogers, KD Bruce, ML Martin, LD Burr… - The lancet Respiratory …, 2014 - thelancet.com
Background Long-term macrolide treatment has proven benefit in inflammatory airways
diseases, but whether it leads to changes in the composition of respiratory microbiota is …

Past, present, and future research on the lung microbiome in inflammatory airway disease

LJ Caverly, YJ Huang, MA Sze - Chest, 2019 - Elsevier
COPD, asthma, and cystic fibrosis (CF) are obstructive lung diseases with distinct
pathophysiologies and clinical phenotypes. In this paper, we highlight recent advances in …

Assessment of airway microbiota and inflammation in cystic fibrosis using multiple sampling methods

ET Zemanick, BD Wagner, CE Robertson… - Annals of the …, 2015 - atsjournals.org
Rationale: Oropharyngeal (OP) swabs and induced sputum (IS) are used for airway bacteria
surveillance in nonexpectorating children with cystic fibrosis (CF). Molecular analyses of …