Genetic association mapping and genome organization of maize

J Yu, ES Buckler - Current opinion in biotechnology, 2006 - Elsevier
Association mapping, a high-resolution method for mapping quantitative trait loci based on
linkage disequilibrium, holds great promise for the dissection of complex genetic traits. The …

Genome‐wide atlas of transcription during maize development

RS Sekhon, H Lin, KL Childs, CN Hansey… - The Plant …, 2011 - Wiley Online Library
Maize is an important model species and a major constituent of human and animal diets. It
has also emerged as a potential feedstock and model system for bioenergy research due to …

Resequencing of 683 common bean genotypes identifies yield component trait associations across a north–south cline

J Wu, L Wang, J Fu, J Chen, S Wei, S Zhang, J Zhang… - Nature Genetics, 2020 - nature.com
We conducted a large-scale genome-wide association study evaluation of 683 common
bean accessions, including landraces and breeding lines, grown over 3 years and in four …

Teosinte ligule allele narrows plant architecture and enhances high-density maize yields

J Tian, C Wang, J Xia, L Wu, G Xu, W Wu, D Li, W Qin… - Science, 2019 - science.org
Increased planting densities have boosted maize yields. Upright plant architecture facilitates
dense planting. Here, we cloned UPA1 (Upright Plant Architecture1) and UPA2, two …

Mendelian and non-Mendelian regulation of gene expression in maize

L Li, K Petsch, R Shimizu, S Liu, WW Xu, K Ying… - PLoS …, 2013 - journals.plos.org
Transcriptome variation plays an important role in affecting the phenotype of an organism.
However, an understanding of the underlying mechanisms regulating transcriptome …

Combined linkage and association mapping reveals QTL and candidate genes for plant and ear height in maize

X Li, Z Zhou, J Ding, Y Wu, B Zhou, R Wang… - Frontiers in plant …, 2016 - frontiersin.org
Plant height (PH) and ear height (EH) are two very important agronomic traits related to the
population density and lodging in maize. In order to better understand of the genetic basis of …

Dynamic plant height QTL revealed in maize through remote sensing phenotyping using a high-throughput unmanned aerial vehicle (UAV)

X Wang, R Zhang, W Song, L Han, X Liu, X Sun… - Scientific reports, 2019 - nature.com
Plant height (PH) is a key factor in maize (Zea mays L.) yield, biomass, and plant
architecture. We investigated the PH of diverse maize inbred lines (117 temperate lines, 135 …

Genetic Architecture of Phenomic-Enabled Canopy Coverage in Glycine max

A Xavier, B Hall, AA Hearst, KA Cherkauer… - Genetics, 2017 - academic.oup.com
Digital imagery can help to quantify seasonal changes in desirable crop phenotypes that
can be treated as quantitative traits. Because limitations in precise and functional …

Widespread long-range cis-regulatory elements in the maize genome

WA Ricci, Z Lu, L Ji, AP Marand, CL Ethridge… - Nature plants, 2019 - nature.com
Genetic mapping studies on crops suggest that agronomic traits can be controlled by gene–
distal intergenic loci. Despite the biological importance and the potential agronomic utility of …

Genetic design and statistical power of nested association mapping in maize

J Yu, JB Holland, MD McMullen, ES Buckler - Genetics, 2008 - academic.oup.com
We investigated the genetic and statistical properties of the nested association mapping
(NAM) design currently being implemented in maize (26 diverse founders and 5000 distinct …