CRISPResso2 provides accurate and rapid genome editing sequence analysis

K Clement, H Rees, MC Canver, JM Gehrke… - Nature …, 2019 - nature.com
To the Editor—The field of genome editing is advancing rapidly1, most recently exemplified
by the advent of base editors that enable changing single nucleotides in a predictable …

Combinatorial mutagenesis en masse optimizes the genome editing activities of SpCas9

GCG Choi, P Zhou, CTL Yuen, BKC Chan, F Xu… - Nature …, 2019 - nature.com
The combined effect of multiple mutations on protein function is hard to predict; thus, the
ability to functionally assess a vast number of protein sequence variants would be practically …

[HTML][HTML] Open-source guideseq software for analysis of GUIDE-seq data

SQ Tsai, VV Topkar, JK Joung, MJ Aryee - Nature Biotechnology, 2016 - nature.com
To the Editor: We recently described the genome-wide, unbiased identification of double-
strand breaks (DSBs) enabled by sequencing (GUIDE-seq) technology, a sensitive method …

Precision genome editing using cytosine and adenine base editors in mammalian cells

TP Huang, GA Newby, DR Liu - Nature protocols, 2021 - nature.com
Genome editing has transformed the life sciences and has exciting prospects for use in
treating genetic diseases. Our laboratory developed base editing to enable precise and …

Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering

AD Garst, MC Bassalo, G Pines, SA Lynch… - Nature …, 2017 - nature.com
Improvements in DNA synthesis and sequencing have underpinned comprehensive
assessment of gene function in bacteria and eukaryotes. Genome-wide analyses require …

CrispRVariants charts the mutation spectrum of genome engineering experiments

H Lindsay, A Burger, B Biyong, A Felker, C Hess… - Nature …, 2016 - nature.com
CRISPR-Cas9 and related technologies enable the efficient alteration of genomic DNA at
targeted positions and are widely used in applications ranging from individual gene …

Ballgown bridges the gap between transcriptome assembly and expression analysis

AC Frazee, G Pertea, AE Jaffe, B Langmead… - Nature …, 2015 - nature.com
To the Editor: Analysis of raw reads from RNA sequencing (RNA-seq) makes it possible to
reconstruct complete gene structures, including multiple splice variants, without relying on …

A global observatory for gene editing

S Jasanoff, JB Hurlbut - Nature, 2018 - nature.com
A global observatory for gene editing Skip to main content Thank you for visiting nature.com.
You are using a browser version with limited support for CSS. To obtain the best experience …

[HTML][HTML] Functional genetic variants revealed by massively parallel precise genome editing

E Sharon, SAA Chen, NM Khosla, JD Smith… - Cell, 2018 - cell.com
A major challenge in genetics is to identify genetic variants driving natural phenotypic
variation. However, current methods of genetic mapping have limited resolution. To address …

Whole-organism lineage tracing by combinatorial and cumulative genome editing

A McKenna, GM Findlay, JA Gagnon, MS Horwitz… - Science, 2016 - science.org
INTRODUCTION The developmental path by which a fertilized egg gives rise to the cells of a
multicellular organism is termed the cell lineage. In 1983, John Sulston and colleagues …