Comparative analysis of Plasmodium falciparum genotyping via SNP detection, microsatellite profiling, and whole-genome sequencing
Research efforts to combat antimalarial drug resistance rely on quick, robust, and sensitive
methods to genetically characterize Plasmodium falciparum parasites. We developed a …
methods to genetically characterize Plasmodium falciparum parasites. We developed a …
A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking
Background Single nucleotide polymorphism (SNP) genotyping provides the means to
develop a practical, rapid, inexpensive assay that will uniquely identify any Plasmodium …
develop a practical, rapid, inexpensive assay that will uniquely identify any Plasmodium …
Population Genetic Analysis of Plasmodium falciparum Parasites Using a Customized Illumina GoldenGate Genotyping Assay
The diversity in the Plasmodium falciparum genome can be used to explore parasite
population dynamics, with practical applications to malaria control. The ability to identify the …
population dynamics, with practical applications to malaria control. The ability to identify the …
High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology
S Nag, MD Dalgaard, PE Kofoed, J Ursing, M Crespo… - Scientific reports, 2017 - nature.com
Genetic polymorphisms in P. falciparum can be used to indicate the parasite's susceptibility
to antimalarial drugs as well as its geographical origin. Both of these factors are key to …
to antimalarial drugs as well as its geographical origin. Both of these factors are key to …
An analysis of large structural variation in global Plasmodium falciparum isolates identifies a novel duplication of the chloroquine resistance associated gene
M Ravenhall, ED Benavente, CJ Sutherland… - Scientific reports, 2019 - nature.com
The evolution of genetic mechanisms for host immune evasion and anti-malarial resistance
has enabled the Plasmodium falciparum malaria parasite to inflict high morbidity and …
has enabled the Plasmodium falciparum malaria parasite to inflict high morbidity and …
A microarray platform and novel SNP calling algorithm to evaluate Plasmodium falciparum field samples of low DNA quantity
CG Jacob, JC Tan, BA Miller, A Tan, S Takala-Harrison… - BMC genomics, 2014 - Springer
Background Analysis of single nucleotide polymorphisms (SNPs) derived from whole-
genome studies allows for rapid evaluation of genome-wide diversity, and genomic …
genome studies allows for rapid evaluation of genome-wide diversity, and genomic …
Microsatellite markers and genetic mapping in Plasmodium falciparum
MT Ferdig, XZ Su - Parasitology Today, 2000 - cell.com
Whole-genome methods are changing the scope of biological questions that can be
addressed in malaria research. In the rich context provided by Plasmodium falciparum …
addressed in malaria research. In the rich context provided by Plasmodium falciparum …
Pooled Deep Sequencing of Plasmodium falciparum Isolates: An Efficient and Scalable Tool to Quantify Prevailing Malaria Drug-Resistance Genotypes
SM Taylor, CM Parobek, N Aragam… - The Journal of …, 2013 - academic.oup.com
Molecular surveillance for drug-resistant malaria parasites requires reliable, timely, and
scalable methods. These data may be efficiently produced by genotyping parasite …
scalable methods. These data may be efficiently produced by genotyping parasite …
[HTML][HTML] Spatio-temporal distribution of antimalarial drug resistant gene mutations in a Plasmodium falciparum parasite population from Kilifi, Kenya: A 25 …
I Omedo, B Bartilol, D Kimani… - Wellcome Open …, 2022 - wellcomeopenresearch.org
Background: Antimalarial drug resistance is a major obstacle to sustainable malaria control.
Here we use amplicon sequencing to describe molecular markers of drug resistance in …
Here we use amplicon sequencing to describe molecular markers of drug resistance in …
Genome-wide SNP analysis of Plasmodium falciparum shows differentiation at drug-resistance-associated loci among malaria transmission settings in southern Mali
Plasmodium falciparum malaria cases in Africa represent over 90% of the global burden
with Mali being amongst the 11 highest burden countries that account for 70% of this annual …
with Mali being amongst the 11 highest burden countries that account for 70% of this annual …
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