Comparative analysis of Plasmodium falciparum genotyping via SNP detection, microsatellite profiling, and whole-genome sequencing

M Kanai, T Yeo, V Asua, PJ Rosenthal… - Antimicrobial Agents …, 2022 - Am Soc Microbiol
Research efforts to combat antimalarial drug resistance rely on quick, robust, and sensitive
methods to genetically characterize Plasmodium falciparum parasites. We developed a …

A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking

R Daniels, SK Volkman, DA Milner, N Mahesh… - Malaria journal, 2008 - Springer
Background Single nucleotide polymorphism (SNP) genotyping provides the means to
develop a practical, rapid, inexpensive assay that will uniquely identify any Plasmodium …

Population Genetic Analysis of Plasmodium falciparum Parasites Using a Customized Illumina GoldenGate Genotyping Assay

S Campino, S Auburn, K Kivinen, I Zongo… - PloS one, 2011 - journals.plos.org
The diversity in the Plasmodium falciparum genome can be used to explore parasite
population dynamics, with practical applications to malaria control. The ability to identify the …

High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology

S Nag, MD Dalgaard, PE Kofoed, J Ursing, M Crespo… - Scientific reports, 2017 - nature.com
Genetic polymorphisms in P. falciparum can be used to indicate the parasite's susceptibility
to antimalarial drugs as well as its geographical origin. Both of these factors are key to …

An analysis of large structural variation in global Plasmodium falciparum isolates identifies a novel duplication of the chloroquine resistance associated gene

M Ravenhall, ED Benavente, CJ Sutherland… - Scientific reports, 2019 - nature.com
The evolution of genetic mechanisms for host immune evasion and anti-malarial resistance
has enabled the Plasmodium falciparum malaria parasite to inflict high morbidity and …

A microarray platform and novel SNP calling algorithm to evaluate Plasmodium falciparum field samples of low DNA quantity

CG Jacob, JC Tan, BA Miller, A Tan, S Takala-Harrison… - BMC genomics, 2014 - Springer
Background Analysis of single nucleotide polymorphisms (SNPs) derived from whole-
genome studies allows for rapid evaluation of genome-wide diversity, and genomic …

Microsatellite markers and genetic mapping in Plasmodium falciparum

MT Ferdig, XZ Su - Parasitology Today, 2000 - cell.com
Whole-genome methods are changing the scope of biological questions that can be
addressed in malaria research. In the rich context provided by Plasmodium falciparum …

Pooled Deep Sequencing of Plasmodium falciparum Isolates: An Efficient and Scalable Tool to Quantify Prevailing Malaria Drug-Resistance Genotypes

SM Taylor, CM Parobek, N Aragam… - The Journal of …, 2013 - academic.oup.com
Molecular surveillance for drug-resistant malaria parasites requires reliable, timely, and
scalable methods. These data may be efficiently produced by genotyping parasite …

[HTML][HTML] Spatio-temporal distribution of antimalarial drug resistant gene mutations in a Plasmodium falciparum parasite population from Kilifi, Kenya: A 25 …

I Omedo, B Bartilol, D Kimani… - Wellcome Open …, 2022 - wellcomeopenresearch.org
Background: Antimalarial drug resistance is a major obstacle to sustainable malaria control.
Here we use amplicon sequencing to describe molecular markers of drug resistance in …

Genome-wide SNP analysis of Plasmodium falciparum shows differentiation at drug-resistance-associated loci among malaria transmission settings in southern Mali

A Coulibaly, MF Diop, A Kone, A Dara… - Frontiers in …, 2022 - frontiersin.org
Plasmodium falciparum malaria cases in Africa represent over 90% of the global burden
with Mali being amongst the 11 highest burden countries that account for 70% of this annual …