[HTML][HTML] Prediction of maize phenotypic traits with genomic and environmental predictors using gradient boosting frameworks

CC Westhues, GS Mahone, S da Silva… - Frontiers in plant …, 2021 - frontiersin.org
The development of crop varieties with stable performance in future environmental
conditions represents a critical challenge in the context of climate change. Environmental …

Use of crop growth models with whole‐genome prediction: application to a maize multienvironment trial

M Cooper, F Technow, C Messina, C Gho… - Crop Science, 2016 - Wiley Online Library
High throughput genotyping, phenotyping, and envirotyping applied within plant breeding
multienvironment trials (METs) provide the data foundations for selection and tackling …

Genomic prediction applied to multiple traits and environments in second season maize hybrids

AA de Oliveira, MFR Resende Jr, LFV Ferrão… - Heredity, 2020 - nature.com
Genomic selection has become a reality in plant breeding programs with the reduction in
genotyping costs. Especially in maize breeding programs, it emerges as a promising tool for …

Environment-specific genomic prediction ability in maize using environmental covariates depends on environmental similarity to training data

AR Rogers, JB Holland - G3, 2022 - academic.oup.com
Technology advances have made possible the collection of a wealth of genomic,
environmental, and phenotypic data for use in plant breeding. Incorporation of …

learnMET: an R package to apply machine learning methods for genomic prediction using multi-environment trial data

CC Westhues, H Simianer, TM Beissinger - G3, 2022 - academic.oup.com
We introduce the R-package learnMET, developed as a flexible framework to enable a
collection of analyses on multi-environment trial breeding data with machine learning-based …

Genomic prediction and association mapping of maize grain yield in multi-environment trials based on reaction norm models

SA Tolley, LF Brito, DR Wang, MR Tuinstra - Frontiers in Genetics, 2023 - frontiersin.org
Genotype-by-environment interaction (GEI) is among the greatest challenges for maize
breeding programs. Strong GEI limits both the prediction of genotype performance across …

Increased Predictive Accuracy of Multi-Environment Genomic Prediction Model for Yield and Related Traits in Spring Wheat (Triticum aestivum L.)

V Tomar, D Singh, GS Dhillon, YS Chung… - Frontiers in Plant …, 2021 - frontiersin.org
Genomic selection (GS) has the potential to improve the selection gain for complex traits in
crop breeding programs from resource-poor countries. The GS model performance in multi …

Utility of climatic information via combining ability models to improve genomic prediction for yield within the genomes to fields maize project

D Jarquin, N De Leon, C Romay, M Bohn… - Frontiers in …, 2021 - frontiersin.org
Genomic prediction provides an efficient alternative to conventional phenotypic selection for
developing improved cultivars with desirable characteristics. New and improved methods to …

[HTML][HTML] Crop genomic selection with deep learning and environmental data: A survey

S Jubair, M Domaratzki - Frontiers in Artificial Intelligence, 2023 - frontiersin.org
Machine learning techniques for crop genomic selections, especially for single-environment
plants, are well-developed. These machine learning models, which use dense genome …

[HTML][HTML] Leveraging data from the Genomes-to-Fields Initiative to investigate genotype-by-environment interactions in maize in North America

M Lopez-Cruz, FM Aguate, JD Washburn… - Nature …, 2023 - nature.com
Genotype-by-environment (G× E) interactions can significantly affect crop performance and
stability. Investigating G× E requires extensive data sets with diverse cultivars tested over …