[HTML][HTML] Prediction of maize phenotypic traits with genomic and environmental predictors using gradient boosting frameworks
CC Westhues, GS Mahone, S da Silva… - Frontiers in plant …, 2021 - frontiersin.org
The development of crop varieties with stable performance in future environmental
conditions represents a critical challenge in the context of climate change. Environmental …
conditions represents a critical challenge in the context of climate change. Environmental …
Use of crop growth models with whole‐genome prediction: application to a maize multienvironment trial
High throughput genotyping, phenotyping, and envirotyping applied within plant breeding
multienvironment trials (METs) provide the data foundations for selection and tackling …
multienvironment trials (METs) provide the data foundations for selection and tackling …
Genomic prediction applied to multiple traits and environments in second season maize hybrids
AA de Oliveira, MFR Resende Jr, LFV Ferrão… - Heredity, 2020 - nature.com
Genomic selection has become a reality in plant breeding programs with the reduction in
genotyping costs. Especially in maize breeding programs, it emerges as a promising tool for …
genotyping costs. Especially in maize breeding programs, it emerges as a promising tool for …
Environment-specific genomic prediction ability in maize using environmental covariates depends on environmental similarity to training data
AR Rogers, JB Holland - G3, 2022 - academic.oup.com
Technology advances have made possible the collection of a wealth of genomic,
environmental, and phenotypic data for use in plant breeding. Incorporation of …
environmental, and phenotypic data for use in plant breeding. Incorporation of …
learnMET: an R package to apply machine learning methods for genomic prediction using multi-environment trial data
CC Westhues, H Simianer, TM Beissinger - G3, 2022 - academic.oup.com
We introduce the R-package learnMET, developed as a flexible framework to enable a
collection of analyses on multi-environment trial breeding data with machine learning-based …
collection of analyses on multi-environment trial breeding data with machine learning-based …
Genomic prediction and association mapping of maize grain yield in multi-environment trials based on reaction norm models
Genotype-by-environment interaction (GEI) is among the greatest challenges for maize
breeding programs. Strong GEI limits both the prediction of genotype performance across …
breeding programs. Strong GEI limits both the prediction of genotype performance across …
Increased Predictive Accuracy of Multi-Environment Genomic Prediction Model for Yield and Related Traits in Spring Wheat (Triticum aestivum L.)
Genomic selection (GS) has the potential to improve the selection gain for complex traits in
crop breeding programs from resource-poor countries. The GS model performance in multi …
crop breeding programs from resource-poor countries. The GS model performance in multi …
Utility of climatic information via combining ability models to improve genomic prediction for yield within the genomes to fields maize project
Genomic prediction provides an efficient alternative to conventional phenotypic selection for
developing improved cultivars with desirable characteristics. New and improved methods to …
developing improved cultivars with desirable characteristics. New and improved methods to …
[HTML][HTML] Crop genomic selection with deep learning and environmental data: A survey
S Jubair, M Domaratzki - Frontiers in Artificial Intelligence, 2023 - frontiersin.org
Machine learning techniques for crop genomic selections, especially for single-environment
plants, are well-developed. These machine learning models, which use dense genome …
plants, are well-developed. These machine learning models, which use dense genome …
[HTML][HTML] Leveraging data from the Genomes-to-Fields Initiative to investigate genotype-by-environment interactions in maize in North America
Genotype-by-environment (G× E) interactions can significantly affect crop performance and
stability. Investigating G× E requires extensive data sets with diverse cultivars tested over …
stability. Investigating G× E requires extensive data sets with diverse cultivars tested over …