Enviromic prediction is useful to define the limits of climate adaptation: a case study of common bean in Brazil

AB Heinemann, G Costa-Neto, R Fritsche-Neto… - Field Crops …, 2022 - Elsevier
Ongoing changes in the global environmental conditions foster plant breeding research to
develop climate-smart cultivars as fast as possible. Data analytics are essential for achieving …

Genomic prediction in biparental tropical maize populations in water-stressed and well-watered environments using low-density and GBS SNPs

X Zhang, P Pérez-Rodríguez, K Semagn, Y Beyene… - Heredity, 2015 - nature.com
One of the most important applications of genomic selection in maize breeding is to predict
and identify the best untested lines from biparental populations, when the training and …

Increased prediction accuracy in wheat breeding trials using a marker× environment interaction genomic selection model

M Lopez-Cruz, J Crossa, D Bonnett… - G3: Genes …, 2015 - academic.oup.com
Genomic selection (GS) models use genome-wide genetic information to predict genetic
values of candidates of selection. Originally, these models were developed without …

Benchmarking parametric and machine learning models for genomic prediction of complex traits

CB Azodi, E Bolger, A McCarren… - G3: Genes …, 2019 - academic.oup.com
The usefulness of genomic prediction in crop and livestock breeding programs has
prompted efforts to develop new and improved genomic prediction algorithms, such as …

Single-and multi-trait genomic prediction and genome-wide association analysis of grain yield and micronutrient-related traits in ICARDA wheat under drought …

W Tadesse, ZE Gataa, FE Rachdad… - Molecular Genetics and …, 2023 - Springer
Globally, over 2 billion people suffer from malnutrition due to inadequate intake of
micronutrients. Genomic-assisted breeding is identified as a valuable method to facilitate …

A genomic Bayesian multi-trait and multi-environment model

OA Montesinos-López… - G3: Genes …, 2016 - academic.oup.com
When information on multiple genotypes evaluated in multiple environments is recorded, a
multi-environment single trait model for assessing genotype× environment interaction (G× E) …

A Bayesian genomic multi-output regressor stacking model for predicting multi-trait multi-environment plant breeding data

OA Montesinos-López… - G3: Genes …, 2019 - academic.oup.com
In this paper we propose a Bayesian multi-output regressor stacking (BMORS) model that is
a generalization of the multi-trait regressor stacking method. The proposed BMORS model …

Towards a multiscale crop modelling framework for climate change adaptation assessment

B Peng, K Guan, J Tang, EA Ainsworth, S Asseng… - Nature plants, 2020 - nature.com
Predicting the consequences of manipulating genotype (G) and agronomic management (M)
on agricultural ecosystem performances under future environmental (E) conditions remains …

Do feature selection methods for selecting environmental covariables enhance genomic prediction accuracy?

OA Montesinos-López, L Crespo-Herrera… - Frontiers in …, 2023 - frontiersin.org
Genomic selection (GS) is transforming plant and animal breeding, but its practical
implementation for complex traits and multi-environmental trials remains challenging. To …

Genomic selection for drought tolerance using genome-wide SNPs in maize

M Shikha, A Kanika, AR Rao, MG Mallikarjuna… - Frontiers in plant …, 2017 - frontiersin.org
Traditional breeding strategies for selecting superior genotypes depending on phenotypic
traits have proven to be of limited success, as this direct selection is hindered by low …