Drug–drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths

Y Zhang, W Zheng, H Lin, J Wang, Z Yang… - …, 2018 - academic.oup.com
Motivation Adverse events resulting from drug-drug interactions (DDI) pose a serious health
issue. The ability to automatically extract DDIs described in the biomedical literature could …

Dependency-based long short term memory network for drug-drug interaction extraction

W Wang, X Yang, C Yang, X Guo, X Zhang, C Wu - BMC bioinformatics, 2017 - Springer
Background Drug-drug interaction extraction (DDI) needs assistance from automated
methods to address the explosively increasing biomedical texts. In recent years, deep neural …

Drug‐drug interaction extraction via convolutional neural networks

S Liu, B Tang, Q Chen, X Wang - … and mathematical methods in …, 2016 - Wiley Online Library
Drug‐drug interaction (DDI) extraction as a typical relation extraction task in natural
language processing (NLP) has always attracted great attention. Most state‐of‐the‐art DDI …

Using drug descriptions and molecular structures for drug–drug interaction extraction from literature

M Asada, M Miwa, Y Sasaki - Bioinformatics, 2021 - academic.oup.com
Motivation Neural methods to extract drug–drug interactions (DDIs) from literature require a
large number of annotations. In this study, we propose a novel method to effectively utilize …

An attention-based effective neural model for drug-drug interactions extraction

W Zheng, H Lin, L Luo, Z Zhao, Z Li, Y Zhang, Z Yang… - BMC …, 2017 - Springer
Abstract Background Drug-drug interactions (DDIs) often bring unexpected side effects. The
clinical recognition of DDIs is a crucial issue for both patient safety and healthcare cost …

Extracting drug-drug interactions with attention CNNs

M Asada, M Miwa, Y Sasaki - BioNLP 2017, 2017 - aclanthology.org
We propose a novel attention mechanism for a Convolutional Neural Network (CNN)-based
Drug-Drug Interaction (DDI) extraction model. CNNs have been shown to have a great …

AGCN: Attention-based graph convolutional networks for drug-drug interaction extraction

C Park, J Park, S Park - Expert Systems with Applications, 2020 - Elsevier
Extracting drug-drug interaction (DDI) relations is one of the most typical tasks in the field of
biomedical relation extraction. Automatic DDI extraction from the biomedical corpus is …

Enhancing drug-drug interaction extraction from texts by molecular structure information

M Asada, M Miwa, Y Sasaki - arXiv preprint arXiv:1805.05593, 2018 - arxiv.org
We propose a novel neural method to extract drug-drug interactions (DDIs) from texts using
external drug molecular structure information. We encode textual drug pairs with …

Drug-drug interaction extraction via recurrent neural network with multiple attention layers

Z Yi, S Li, J Yu, Y Tan, Q Wu, H Yuan… - Advanced Data Mining and …, 2017 - Springer
Drug-drug interaction (DDI) is a vital information when physicians and pharmacists intend to
co-administer two or more drugs. Thus, several DDI databases are constructed to avoid …

A novel feature-based approach to extract drug–drug interactions from biomedical text

QC Bui, PMA Sloot, EM Van Mulligen, JA Kors - Bioinformatics, 2014 - academic.oup.com
Motivation: Knowledge of drug–drug interactions (DDIs) is crucial for health-care
professionals to avoid adverse effects when co-administering drugs to patients. As most …