[HTML][HTML] Genome-wide DNA methylation profiling by modified reduced representation bisulfite sequencing in Brassica rapa suggests that epigenetic modifications …

X Chen, X Ge, J Wang, C Tan, GJ King… - Frontiers in plant …, 2015 - frontiersin.org
Brassica rapa includes some of the most important vegetables worldwide as well as oilseed
crops. The complete annotated genome sequence confirmed its paleohexaploid origins and …

[HTML][HTML] Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

IAP Parkin, C Koh, H Tang, SJ Robinson, S Kagale… - Genome biology, 2014 - Springer
Background Brassica oleracea is a valuable vegetable species that has contributed to
human health and nutrition for hundreds of years and comprises multiple distinct cultivar …

Analysis of cytosine methylation in early generations of resynthesized Brassica napus

LP Ran, TT Fang, R Hao, JJ Jiang, YJ Fang… - Journal of Integrative …, 2016 - Elsevier
DNA methylation, an important epigenetic modification, serves as a key function in the
polyploidization of numerous crops. In this study, early generations of resynthesized …

The cytosine methylation landscape of spring barley revealed by a new reduced representation bisulfite sequencing pipeline, WellMeth

M Malinowska, I Nagy, CAM Wagemaker… - The Plant …, 2020 - Wiley Online Library
Patterns and level of cytosine methylation vary widely among plant species and are
associated with genome size as well as the proportion of transposons and other repetitive …

[HTML][HTML] Biased Gene Fractionation and Dominant Gene Expression among the Subgenomes of Brassica rapa

F Cheng, J Wu, L Fang, S Sun, B Liu, K Lin… - PloS one, 2012 - journals.plos.org
Polyploidization, both ancient and recent, is frequent among plants. A “two-step theory" was
proposed to explain the meso-triplication of the Brassica “A" genome: Brassica rapa. By …

[HTML][HTML] Genome-wide analysis of long noncoding RNAs, 24-nt siRNAs, DNA methylation and H3K27me3 marks in Brassica rapa

H Mehraj, DJ Shea, S Takahashi, N Miyaji, A Akter… - PLoS …, 2021 - journals.plos.org
Long noncoding RNAs (lncRNAs) are RNA fragments that generally do not code for a
protein but are involved in epigenetic gene regulation. In this study, lncRNAs of Brassica …

DNA methylation signatures of duplicate gene evolution in angiosperms

SK Kenchanmane Raju, M Ledford… - Plant …, 2023 - academic.oup.com
Gene duplication is a source of evolutionary novelty. DNA methylation may play a role in the
evolution of duplicate genes (paralogs) through its association with gene expression. While …

[HTML][HTML] Covering your bases: inheritance of DNA methylation in plant genomes

CE Niederhuth, RJ Schmitz - Molecular plant, 2014 - cell.com
Cytosine methylation is an important base modification that is inherited across mitotic and
meiotic cell divisions in plant genomes. Heritable methylation variants can contribute to …

[HTML][HTML] Repeat evolution in Brassica rapa (AA), B. oleracea (CC), and B. napus (AACC) genomes

NE Waminal, S Perumal, J Lee, HH Kim… - Plant breeding and …, 2016 - plantbreedbio.org
The genus Brassica is an important resource for major agricultural products such as oils,
vegetable and fodder. The Brassiceae tribe-specific whole-genome triplication that …

[HTML][HTML] Asymmetric epigenome maps of subgenomes reveal imbalanced transcription and distinct evolutionary trends in Brassica napus

Q Zhang, P Guan, L Zhao, M Ma, L Xie, Y Li, R Zheng… - Molecular Plant, 2021 - cell.com
The complexity of the epigenome landscape and transcriptional regulation is significantly
increased during plant polyploidization, which drives genome evolution and contributes to …