Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication
Abstract Background and Aims Theaceae, with three tribes, nine genera and more than 200
species, are of great economic and ecological importance. Recent phylogenetic analyses …
species, are of great economic and ecological importance. Recent phylogenetic analyses …
Phylotranscriptomic analyses reveal multiple whole-genome duplication events, the history of diversification and adaptations in the Araceae
L Zhao, YY Yang, XJ Qu, H Ma, Y Hu, HT Li… - Annals of …, 2023 - academic.oup.com
Abstract Background and Aims The Araceae are one of the most diverse monocot families
with numerous morphological and ecological novelties. Plastid and mitochondrial genes …
with numerous morphological and ecological novelties. Plastid and mitochondrial genes …
Dissecting molecular evolution in the highly diverse plant clade Caryophyllales using transcriptome sequencing
Many phylogenomic studies based on transcriptomes have been limited to “single-copy”
genes due to methodological challenges in homology and orthology inferences. Only a …
genes due to methodological challenges in homology and orthology inferences. Only a …
Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets
Explosive diversification is widespread in eukaryotes, making it difficult to resolve
phylogenetic relationships. Eudicots contain c. 75% of extant flowering plants, are important …
phylogenetic relationships. Eudicots contain c. 75% of extant flowering plants, are important …
Phylotranscriptomic insights into Asteraceae diversity, polyploidy, and morphological innovation
C Zhang, CH Huang, M Liu, Y Hu… - Journal of Integrative …, 2021 - Wiley Online Library
Biodiversity is not evenly distributed among related groups, raising questions about the
factors contributing to such disparities. The sunflower family (Asteraceae,> 26,000 species) …
factors contributing to such disparities. The sunflower family (Asteraceae,> 26,000 species) …
[HTML][HTML] Phylogenomics resolves the phylogeny of Theaceae by using low-copy and multi-copy nuclear gene makers and uncovers a fast radiation event contributing …
L Cheng, M Li, Q Han, Z Qiao, Y Hao, TS Balbuena… - Biology, 2022 - mdpi.com
Simple Summary The Theaceae includes more than 300 species of great morphological
diversity and has immense economic, cultural, and ornamental values. However, the …
diversity and has immense economic, cultural, and ornamental values. However, the …
Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high‐Andean diversification (Asteraceae: Astereae: Diplostephium)
High‐throughput sequencing is helping biologists to overcome the difficulties of inferring the
phylogenies of recently diverged taxa. The present study analyzes the phylogenetic signal of …
phylogenies of recently diverged taxa. The present study analyzes the phylogenetic signal of …
Using phylogenomics to resolve mega‐families: An example from Compositae
Next‐generation sequencing and phylogenomics hold great promise for elucidating
complex relationships among large plant families. Here, we performed targeted capture of …
complex relationships among large plant families. Here, we performed targeted capture of …
[HTML][HTML] A genome triplication associated with early diversification of the core eudicots
Background Although it is agreed that a major polyploidy event, gamma, occurred within the
eudicots, the phylogenetic placement of the event remains unclear. Results To determine …
eudicots, the phylogenetic placement of the event remains unclear. Results To determine …
[HTML][HTML] Phylotranscriptomics illuminates the placement of whole genome duplications and gene retention in ferns
JA Pelosi, EH Kim, WB Barbazuk… - Frontiers in Plant Science, 2022 - frontiersin.org
Ferns are the second largest clade of vascular plants with over 10,000 species, yet the
generation of genomic resources for the group has lagged behind other major clades of …
generation of genomic resources for the group has lagged behind other major clades of …