Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication

Q Zhang, L Zhao, RA Folk, JL Zhao… - Annals of …, 2022 - academic.oup.com
Abstract Background and Aims Theaceae, with three tribes, nine genera and more than 200
species, are of great economic and ecological importance. Recent phylogenetic analyses …

Phylotranscriptomic analyses reveal multiple whole-genome duplication events, the history of diversification and adaptations in the Araceae

L Zhao, YY Yang, XJ Qu, H Ma, Y Hu, HT Li… - Annals of …, 2023 - academic.oup.com
Abstract Background and Aims The Araceae are one of the most diverse monocot families
with numerous morphological and ecological novelties. Plastid and mitochondrial genes …

Dissecting molecular evolution in the highly diverse plant clade Caryophyllales using transcriptome sequencing

Y Yang, MJ Moore, SF Brockington… - Molecular biology …, 2015 - academic.oup.com
Many phylogenomic studies based on transcriptomes have been limited to “single-copy”
genes due to methodological challenges in homology and orthology inferences. Only a …

Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets

L Zeng, N Zhang, Q Zhang, PK Endress… - New …, 2017 - Wiley Online Library
Explosive diversification is widespread in eukaryotes, making it difficult to resolve
phylogenetic relationships. Eudicots contain c. 75% of extant flowering plants, are important …

Phylotranscriptomic insights into Asteraceae diversity, polyploidy, and morphological innovation

C Zhang, CH Huang, M Liu, Y Hu… - Journal of Integrative …, 2021 - Wiley Online Library
Biodiversity is not evenly distributed among related groups, raising questions about the
factors contributing to such disparities. The sunflower family (Asteraceae,> 26,000 species) …

[HTML][HTML] Phylogenomics resolves the phylogeny of Theaceae by using low-copy and multi-copy nuclear gene makers and uncovers a fast radiation event contributing …

L Cheng, M Li, Q Han, Z Qiao, Y Hao, TS Balbuena… - Biology, 2022 - mdpi.com
Simple Summary The Theaceae includes more than 300 species of great morphological
diversity and has immense economic, cultural, and ornamental values. However, the …

Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high‐Andean diversification (Asteraceae: Astereae: Diplostephium)

OM Vargas, EM Ortiz, BB Simpson - New Phytologist, 2017 - Wiley Online Library
High‐throughput sequencing is helping biologists to overcome the difficulties of inferring the
phylogenies of recently diverged taxa. The present study analyzes the phylogenetic signal of …

Using phylogenomics to resolve mega‐families: An example from Compositae

JR Mandel, RB Dikow, VA Funk - Journal of systematics and …, 2015 - Wiley Online Library
Next‐generation sequencing and phylogenomics hold great promise for elucidating
complex relationships among large plant families. Here, we performed targeted capture of …

[HTML][HTML] A genome triplication associated with early diversification of the core eudicots

Y Jiao, J Leebens-Mack, S Ayyampalayam, JE Bowers… - Genome biology, 2012 - Springer
Background Although it is agreed that a major polyploidy event, gamma, occurred within the
eudicots, the phylogenetic placement of the event remains unclear. Results To determine …

[HTML][HTML] Phylotranscriptomics illuminates the placement of whole genome duplications and gene retention in ferns

JA Pelosi, EH Kim, WB Barbazuk… - Frontiers in Plant Science, 2022 - frontiersin.org
Ferns are the second largest clade of vascular plants with over 10,000 species, yet the
generation of genomic resources for the group has lagged behind other major clades of …