The complete plastome sequences of four orchid species: insights into the evolution of the Orchidaceae and the utility of plastomic mutational hotspots
Z Niu, Q Xue, S Zhu, J Sun, W Liu, X Ding - Frontiers in plant science, 2017 - frontiersin.org
Orchidaceae (orchids) is the largest family in the monocots, including about 25,000 species
in 880 genera and five subfamilies. Many orchids are highly valued for their beautiful and …
in 880 genera and five subfamilies. Many orchids are highly valued for their beautiful and …
Variability among the Most Rapidly Evolving Plastid Genomic Regions is Lineage-Specific: Implications of Pairwise Genome Comparisons in Pyrus (Rosaceae) and …
N Korotkova, L Nauheimer, H Ter-Voskanyan… - PLoS …, 2014 - journals.plos.org
Plastid genomes exhibit different levels of variability in their sequences, depending on the
respective kinds of genomic regions. Genes are usually more conserved while noncoding …
respective kinds of genomic regions. Genes are usually more conserved while noncoding …
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
Although great progress has been made in clarifying deep-level angiosperm relationships,
several early nodes in the angiosperm branch of the Tree of Life have proved difficult to …
several early nodes in the angiosperm branch of the Tree of Life have proved difficult to …
Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone
J Leebens-Mack, LA Raubeson, L Cui… - Molecular Biology …, 2005 - academic.oup.com
While there has been strong support for Amborella and Nymphaeales (water lilies) as
branching from basal-most nodes in the angiosperm phylogeny, this hypothesis has recently …
branching from basal-most nodes in the angiosperm phylogeny, this hypothesis has recently …
Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae
Most plant phylogenetic inference has used DNA sequence data from the plastid genome.
This genome represents a single genealogical sample with no recombination among genes …
This genome represents a single genealogical sample with no recombination among genes …
Negative correlation between rates of molecular evolution and flowering cycles in temperate woody bamboos revealed by plastid phylogenomics
PF Ma, MS Vorontsova, OP Nanjarisoa, J Razanatsoa… - BMC Plant …, 2017 - Springer
Background Heterogeneous rates of molecular evolution are universal across the tree of life,
posing challenges for phylogenetic inference. The temperate woody bamboos (tribe …
posing challenges for phylogenetic inference. The temperate woody bamboos (tribe …
[HTML][HTML] Genome size evolution of the extant lycophytes and ferns
FG Wang, AH Wang, CK Bai, DM Jin, LY Nie, AJ Harris… - Plant Diversity, 2022 - Elsevier
Ferns and lycophytes have remarkably large genomes. However, little is known about how
their genome size evolved in fern lineages. To explore the origins and evolution of …
their genome size evolved in fern lineages. To explore the origins and evolution of …
Single-copy genes as molecular markers for phylogenomic studies in seed plants
Phylogenetic relationships among seed plant taxa, especially within the gymnosperms,
remain contested. In contrast to angiosperms, for which several genomic, transcriptomic and …
remain contested. In contrast to angiosperms, for which several genomic, transcriptomic and …
Potential allopolyploid origin of Ericales revealed with gene-tree reconciliation
Few incidents of ancient allopolyploidization (polyploidization by hybridization or merging
diverged genomes) were previously revealed, although there is significant evidence for the …
diverged genomes) were previously revealed, although there is significant evidence for the …
A target enrichment method for gathering phylogenetic information from hundreds of loci: an example from the Compositae
• Premise of the study: The Compositae (Asteraceae) are a large and diverse family of
plants, and the most comprehensive phylogeny to date is a meta‐tree based on 10 …
plants, and the most comprehensive phylogeny to date is a meta‐tree based on 10 …