[HTML][HTML] Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels

M Erbe, BJ Hayes, LK Matukumalli, S Goswami… - Journal of dairy …, 2012 - Elsevier
Achieving accurate genomic estimated breeding values for dairy cattle requires a very large
reference population of genotyped and phenotyped individuals. Assembling such reference …

Genome-wide association and genomic selection in animal breeding

B Hayes, M Goddard - Genome, 2010 - cdnsciencepub.com
Results from genome-wide association studies in livestock, and humans, has lead to the
conclusion that the effect of individual quantitative trait loci (QTL) on complex traits, such as …

[HTML][HTML] Impacts of both reference population size and inclusion of a residual polygenic effect on the accuracy of genomic prediction

Z Liu, FR Seefried, F Reinhardt, S Rensing… - Genetics Selection …, 2011 - Springer
Background The purpose of this work was to study the impact of both the size of genomic
reference populations and the inclusion of a residual polygenic effect on dairy cattle genetic …

[HTML][HTML] Comparison of genomic predictions using medium-density (∼ 54,000) and high-density (∼ 777,000) single nucleotide polymorphism marker panels in Nordic …

G Su, RF Brøndum, P Ma, B Guldbrandtsen… - Journal of dairy …, 2012 - Elsevier
This study investigated genomic prediction using medium-density (∼ 54,000; 54K) and high-
density marker panels (∼ 777,000; 777K), based on data from Nordic Holstein and Red …

[HTML][HTML] Comparison of genomic predictions using genomic relationship matrices built with different weighting factors to account for locus-specific variances

G Su, OF Christensen, L Janss, MS Lund - Journal of dairy science, 2014 - Elsevier
Various models have been used for genomic prediction. Bayesian variable selection models
often predict more accurate genomic breeding values than genomic BLUP (GBLUP), but …

[HTML][HTML] Invited review: Genomic selection in dairy cattle: Progress and challenges

BJ Hayes, PJ Bowman, AJ Chamberlain… - Journal of dairy …, 2009 - Elsevier
A new technology called genomic selection is revolutionizing dairy cattle breeding. Genomic
selection refers to selection decisions based on genomic breeding values (GEBV). The …

The importance of haplotype length and heritability using genomic selection in dairy cattle

TM Villumsen, L Janss, MS Lund - Journal of Animal Breeding …, 2009 - Wiley Online Library
Reliabilities for genomic estimated breeding values (GEBV) were investigated by simulation
for a typical dairy cattle breeding setting. Scenarios were simulated with different heritabilites …

[HTML][HTML] Methods for genomic evaluation of a relatively small genotyped dairy population and effect of genotyped cow information in multiparity analyses

DAL Lourenco, I Misztal, S Tsuruta, I Aguilar… - Journal of dairy …, 2014 - Elsevier
Methods for genomic prediction were evaluated for an Israeli Holstein dairy population of
713,686 cows and 1,305 progeny-tested bulls with genotypes. Inclusion of genotypes of 343 …

[HTML][HTML] Accuracy of genomic breeding values in multi-breed dairy cattle populations

BJ Hayes, PJ Bowman, AC Chamberlain… - Genetics Selection …, 2009 - Springer
Background Two key findings from genomic selection experiments are 1) the reference
population used must be very large to subsequently predict accurate genomic estimated …

[HTML][HTML] Accuracy of direct genomic values derived from imputed single nucleotide polymorphism genotypes in Jersey cattle

KA Weigel, G de Los Campos, AI Vazquez… - Journal of dairy …, 2010 - Elsevier
The objective of the present study was to evaluate the predictive ability of direct genomic
values for economically important dairy traits when genotypes at some single nucleotide …