[HTML][HTML] Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels
M Erbe, BJ Hayes, LK Matukumalli, S Goswami… - Journal of dairy …, 2012 - Elsevier
Achieving accurate genomic estimated breeding values for dairy cattle requires a very large
reference population of genotyped and phenotyped individuals. Assembling such reference …
reference population of genotyped and phenotyped individuals. Assembling such reference …
Genome-wide association and genomic selection in animal breeding
B Hayes, M Goddard - Genome, 2010 - cdnsciencepub.com
Results from genome-wide association studies in livestock, and humans, has lead to the
conclusion that the effect of individual quantitative trait loci (QTL) on complex traits, such as …
conclusion that the effect of individual quantitative trait loci (QTL) on complex traits, such as …
[HTML][HTML] Impacts of both reference population size and inclusion of a residual polygenic effect on the accuracy of genomic prediction
Z Liu, FR Seefried, F Reinhardt, S Rensing… - Genetics Selection …, 2011 - Springer
Background The purpose of this work was to study the impact of both the size of genomic
reference populations and the inclusion of a residual polygenic effect on dairy cattle genetic …
reference populations and the inclusion of a residual polygenic effect on dairy cattle genetic …
[HTML][HTML] Comparison of genomic predictions using medium-density (∼ 54,000) and high-density (∼ 777,000) single nucleotide polymorphism marker panels in Nordic …
G Su, RF Brøndum, P Ma, B Guldbrandtsen… - Journal of dairy …, 2012 - Elsevier
This study investigated genomic prediction using medium-density (∼ 54,000; 54K) and high-
density marker panels (∼ 777,000; 777K), based on data from Nordic Holstein and Red …
density marker panels (∼ 777,000; 777K), based on data from Nordic Holstein and Red …
[HTML][HTML] Comparison of genomic predictions using genomic relationship matrices built with different weighting factors to account for locus-specific variances
Various models have been used for genomic prediction. Bayesian variable selection models
often predict more accurate genomic breeding values than genomic BLUP (GBLUP), but …
often predict more accurate genomic breeding values than genomic BLUP (GBLUP), but …
[HTML][HTML] Invited review: Genomic selection in dairy cattle: Progress and challenges
BJ Hayes, PJ Bowman, AJ Chamberlain… - Journal of dairy …, 2009 - Elsevier
A new technology called genomic selection is revolutionizing dairy cattle breeding. Genomic
selection refers to selection decisions based on genomic breeding values (GEBV). The …
selection refers to selection decisions based on genomic breeding values (GEBV). The …
The importance of haplotype length and heritability using genomic selection in dairy cattle
TM Villumsen, L Janss, MS Lund - Journal of Animal Breeding …, 2009 - Wiley Online Library
Reliabilities for genomic estimated breeding values (GEBV) were investigated by simulation
for a typical dairy cattle breeding setting. Scenarios were simulated with different heritabilites …
for a typical dairy cattle breeding setting. Scenarios were simulated with different heritabilites …
[HTML][HTML] Methods for genomic evaluation of a relatively small genotyped dairy population and effect of genotyped cow information in multiparity analyses
Methods for genomic prediction were evaluated for an Israeli Holstein dairy population of
713,686 cows and 1,305 progeny-tested bulls with genotypes. Inclusion of genotypes of 343 …
713,686 cows and 1,305 progeny-tested bulls with genotypes. Inclusion of genotypes of 343 …
[HTML][HTML] Accuracy of genomic breeding values in multi-breed dairy cattle populations
BJ Hayes, PJ Bowman, AC Chamberlain… - Genetics Selection …, 2009 - Springer
Background Two key findings from genomic selection experiments are 1) the reference
population used must be very large to subsequently predict accurate genomic estimated …
population used must be very large to subsequently predict accurate genomic estimated …
[HTML][HTML] Accuracy of direct genomic values derived from imputed single nucleotide polymorphism genotypes in Jersey cattle
KA Weigel, G de Los Campos, AI Vazquez… - Journal of dairy …, 2010 - Elsevier
The objective of the present study was to evaluate the predictive ability of direct genomic
values for economically important dairy traits when genotypes at some single nucleotide …
values for economically important dairy traits when genotypes at some single nucleotide …
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