Prediction of HIV-1 drug susceptibility phenotype from the viral genotype using linear regression modeling

H Vermeiren, E Van Craenenbroeck, P Alen… - Journal of virological …, 2007 - Elsevier
Linear regression modeling on a database of HIV-1 genotypes and phenotypes was applied
to predict the HIV-1 resistance phenotype from the viral genotype. In this approach, the …

Genotypic predictors of human immunodeficiency virus type 1 drug resistance

SY Rhee, J Taylor, G Wadhera… - Proceedings of the …, 2006 - National Acad Sciences
Understanding the genetic basis of HIV-1 drug resistance is essential to developing new
antiretroviral drugs and optimizing the use of existing drugs. This understanding, however, is …

Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype

N Beerenwinkel, B Schmidt, H Walter… - Proceedings of the …, 2002 - National Acad Sciences
Drug resistance testing has been shown to be beneficial for clinical management of HIV type
1 infected patients. Whereas phenotypic assays directly measure drug resistance, the …

A genotypic drug resistance interpretation algorithm that significantly predicts therapy response in HIV-1-infected patients

K Van Laethem, A De Luca, A Antinori… - Antiviral …, 2002 - journals.sagepub.com
Objectives The development of a genotypic drug resistance interpretation algorithm, and the
evaluation of its power to predict therapy outcome. Design A rule-based algorithm was …

Characterizing the relationship between HIV‐1 genotype and phenotype: prediction‐based classification

AS Foulkes, VD Gruttola - Biometrics, 2002 - Wiley Online Library
This paper establishes a framework for understanding the complex relationships between
HIV‐1 genotypic markers of resistance to antiretroviral drugs and clinical measures of …

Simple linear model provides highly accurate genotypic predictions of HIV-1 drug resistance

K Wang, E Jenwitheesuk, R Samudrala… - Antiviral …, 2004 - journals.sagepub.com
Drug resistance is a major obstacle to the successful treatment of HIV-1 infection. Genotypic
assays are used widely to provide indirect evidence of drug resistance, but the performance …

Comparative evaluation of three computerized algorithms for prediction of antiretroviral susceptibility from HIV type 1 genotype

M Zazzi, L Romano, G Venturi… - Journal of …, 2004 - academic.oup.com
Objectives: To compare three methods for using HIV-1 genotype to predict antiretroviral drug
susceptibility. Methods: We applied three genotypic interpretation algorithms to 478 reverse …

A comparison of HIV‐1 drug susceptibility as provided by conventional phenotyping and by a phenotype prediction tool based on viral genotype

M Van Houtte, G Picchio… - Journal of medical …, 2009 - Wiley Online Library
Concordance between the conventional HIV‐1 phenotypic drug resistance assay,
PhenoSense™(PS), and virco® TYPE HIV‐1 (vT), a drug resistance assay based on …

Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes

N Beerenwinkel, M Daumer, M Oette… - Nucleic acids …, 2003 - academic.oup.com
Therapeutic success of anti-HIV therapies is limited by the development of drug resistant
viruses. These genetic variants display complex mutational patterns in their pol gene, which …

Automated prediction of HIV drug resistance from genotype data

CH Shen, X Yu, RW Harrison, IT Weber - BMC bioinformatics, 2016 - Springer
Background HIV/AIDS is a serious threat to public health. The emergence of drug resistance
mutations diminishes the effectiveness of drug therapy for HIV/AIDS. Developing a …