Prediction of HIV-1 drug susceptibility phenotype from the viral genotype using linear regression modeling
H Vermeiren, E Van Craenenbroeck, P Alen… - Journal of virological …, 2007 - Elsevier
Linear regression modeling on a database of HIV-1 genotypes and phenotypes was applied
to predict the HIV-1 resistance phenotype from the viral genotype. In this approach, the …
to predict the HIV-1 resistance phenotype from the viral genotype. In this approach, the …
Genotypic predictors of human immunodeficiency virus type 1 drug resistance
SY Rhee, J Taylor, G Wadhera… - Proceedings of the …, 2006 - National Acad Sciences
Understanding the genetic basis of HIV-1 drug resistance is essential to developing new
antiretroviral drugs and optimizing the use of existing drugs. This understanding, however, is …
antiretroviral drugs and optimizing the use of existing drugs. This understanding, however, is …
Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype
N Beerenwinkel, B Schmidt, H Walter… - Proceedings of the …, 2002 - National Acad Sciences
Drug resistance testing has been shown to be beneficial for clinical management of HIV type
1 infected patients. Whereas phenotypic assays directly measure drug resistance, the …
1 infected patients. Whereas phenotypic assays directly measure drug resistance, the …
A genotypic drug resistance interpretation algorithm that significantly predicts therapy response in HIV-1-infected patients
K Van Laethem, A De Luca, A Antinori… - Antiviral …, 2002 - journals.sagepub.com
Objectives The development of a genotypic drug resistance interpretation algorithm, and the
evaluation of its power to predict therapy outcome. Design A rule-based algorithm was …
evaluation of its power to predict therapy outcome. Design A rule-based algorithm was …
Characterizing the relationship between HIV‐1 genotype and phenotype: prediction‐based classification
AS Foulkes, VD Gruttola - Biometrics, 2002 - Wiley Online Library
This paper establishes a framework for understanding the complex relationships between
HIV‐1 genotypic markers of resistance to antiretroviral drugs and clinical measures of …
HIV‐1 genotypic markers of resistance to antiretroviral drugs and clinical measures of …
Simple linear model provides highly accurate genotypic predictions of HIV-1 drug resistance
K Wang, E Jenwitheesuk, R Samudrala… - Antiviral …, 2004 - journals.sagepub.com
Drug resistance is a major obstacle to the successful treatment of HIV-1 infection. Genotypic
assays are used widely to provide indirect evidence of drug resistance, but the performance …
assays are used widely to provide indirect evidence of drug resistance, but the performance …
Comparative evaluation of three computerized algorithms for prediction of antiretroviral susceptibility from HIV type 1 genotype
Objectives: To compare three methods for using HIV-1 genotype to predict antiretroviral drug
susceptibility. Methods: We applied three genotypic interpretation algorithms to 478 reverse …
susceptibility. Methods: We applied three genotypic interpretation algorithms to 478 reverse …
A comparison of HIV‐1 drug susceptibility as provided by conventional phenotyping and by a phenotype prediction tool based on viral genotype
M Van Houtte, G Picchio… - Journal of medical …, 2009 - Wiley Online Library
Concordance between the conventional HIV‐1 phenotypic drug resistance assay,
PhenoSense™(PS), and virco® TYPE HIV‐1 (vT), a drug resistance assay based on …
PhenoSense™(PS), and virco® TYPE HIV‐1 (vT), a drug resistance assay based on …
Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes
N Beerenwinkel, M Daumer, M Oette… - Nucleic acids …, 2003 - academic.oup.com
Therapeutic success of anti-HIV therapies is limited by the development of drug resistant
viruses. These genetic variants display complex mutational patterns in their pol gene, which …
viruses. These genetic variants display complex mutational patterns in their pol gene, which …
Automated prediction of HIV drug resistance from genotype data
Background HIV/AIDS is a serious threat to public health. The emergence of drug resistance
mutations diminishes the effectiveness of drug therapy for HIV/AIDS. Developing a …
mutations diminishes the effectiveness of drug therapy for HIV/AIDS. Developing a …