SoyOmics: a deeply integrated database on soybean multi-omics

Y Liu, Y Zhang, X Liu, Y Shen, D Tian, X Yang, S Liu… - Molecular Plant, 2023 - cell.com
As one of the most important crops to supply the majority of plant oil and protein for the
whole world, soybean is facing an increasing global demand. The reference genome of …

SoyMD: a platform combining multi-omics data with various tools for soybean research and breeding

Z Yang, C Luo, X Pei, S Wang, Y Huang… - Nucleic Acids …, 2024 - academic.oup.com
Advanced multi-omics technologies offer much information that can uncover the regulatory
mechanisms from genotype to phenotype. In soybean, numerous multi-omics databases …

Multi-omics techniques for soybean molecular breeding

P Cao, Y Zhao, F Wu, D Xin, C Liu, X Wu, J Lv… - International Journal of …, 2022 - mdpi.com
Soybean is a major crop that provides essential protein and oil for food and feed. Since its
origin in China over 5000 years ago, soybean has spread throughout the world, becoming …

[HTML][HTML] Pan-genome of wild and cultivated soybeans

Y Liu, H Du, P Li, Y Shen, H Peng, S Liu, GA Zhou… - Cell, 2020 - cell.com
Soybean is one of the most important vegetable oil and protein feed crops. To capture the
entire genomic diversity, it is needed to construct a complete high-quality pan-genome from …

Development of a versatile resource for post-genomic research through consolidating and characterizing 1500 diverse wild and cultivated soybean genomes

H Zhang, H Jiang, Z Hu, Q Song, YC An - BMC genomics, 2022 - Springer
Background With advances in next-generation sequencing technologies, an unprecedented
amount of soybean accessions has been sequenced by many individual studies and made …

SoyNet: a database of co-functional networks for soybean Glycine max

E Kim, S Hwang, I Lee - Nucleic acids research, 2017 - academic.oup.com
Soybean (Glycine max) is a legume crop with substantial economic value, providing a
source of oil and protein for humans and livestock. More than 50% of edible oils consumed …

[PDF][PDF] A general model for" germplasm-omics" data sharing and mining: a case study of SoyFGB v2. 0

T Zheng, Y Li, Y Li, S Zhang, T Ge, C Wang… - Science …, 2022 - cgspace.cgiar.org
Soybean (Glycine max (L.) Merr.) is a crop that originated in China. Soybean is one of the
most important sources of edible vegetable protein and oil, and it has become a model …

BnIR: A multi-omics database with various tools for Brassica napus research and breeding

Z Yang, S Wang, L Wei, Y Huang, D Liu, Y Jia, C Luo… - Molecular Plant, 2023 - cell.com
In the post-genome-wide association study era, multi-omics techniques have shown great
power and potential for candidate gene mining and functional genomics research. However …

Integration of multi-omics technologies for crop improvement: status and prospects

R Zhang, C Zhang, C Yu, J Dong, J Hu - Frontiers in Bioinformatics, 2022 - frontiersin.org
With the rapid development of next-generation sequencing (NGS), multi-omics techniques
have been emerging as effective approaches for crop improvement. Here, we focus mainly …

The evolution of soybean knowledge base (SoyKB)

T Joshi, J Wang, H Zhang, S Chen, S Zeng… - … databases: methods and …, 2017 - Springer
Abstract Soybean Knowledge Base (SoyKB) is a comprehensive all-inclusive web resource
for bridging the gap between soybean translational genomics and molecular breeding. It …