De novo design of biocatalysts

DN Bolon, CA Voigt, SL Mayo - Current opinion in chemical biology, 2002 - Elsevier
The challenging field of de novo enzyme design is beginning to produce exciting results.
The application of powerful computational methods to functional protein design has recently …

De novo enzymes by computational design

H Kries, R Blomberg, D Hilvert - Current opinion in chemical biology, 2013 - Elsevier
Computational enzyme design has emerged as a promising tool for generating made-to-
order biocatalysts. In addition to improving the reliability of the design cycle, current efforts in …

Computational tools for designing and engineering biocatalysts

J Damborsky, J Brezovsky - Current opinion in chemical biology, 2009 - Elsevier
Current computational tools to assist experimentalists for the design and engineering of
proteins with desired catalytic properties are reviewed. The applications of these tools for de …

Computational design gains momentum in enzyme catalysis engineering

HJ Wijma, DB Janssen - The FEBS journal, 2013 - Wiley Online Library
Computational protein design is becoming a powerful tool for tailoring enzymes for specific
biotechnological applications. When applied to existing enzymes, computational re‐design …

Milestones in directed enzyme evolution

H Tao, VW Cornish - Current opinion in chemical biology, 2002 - Elsevier
Directed evolution has now been used for over two decades as an alternative to rational
design for protein engineering. Protein function, however, is complex, and modifying …

Computational design of synthetic enzymes

V Vaissier Welborn, T Head-Gordon - Chemical reviews, 2018 - ACS Publications
We review the standard model for de novo computational design of enzymes, which
primarily focuses on the development of an active-site geometry, composed of protein …

Novel methods for directed evolution of enzymes: quality, not quantity

S Lutz, WM Patrick - Current opinion in biotechnology, 2004 - Elsevier
In the past decade methods of directed molecular evolution have proven revolutionary in
protein engineering. An increasing number of powerful new combinatorial techniques have …

Tailoring new enzyme functions by rational redesign

F Cedrone, A Ménez, E Quéméneur - Current opinion in structural biology, 2000 - Elsevier
Site-directed mutagenesis is still a very efficient strategy to elaborate improved enzymes.
Recently, advances have been made in developing rational strategies aimed at reshaping …

Optimising enzyme function by directed evolution

PA Dalby - Current opinion in structural biology, 2003 - Elsevier
The past decade has seen a revolution in our ability to engineer designer enzymes using
genetic tools that mimic evolution on a laboratory timescale. Many excellent examples of …

De novo computational enzyme design

A Zanghellini - Current opinion in biotechnology, 2014 - Elsevier
Highlights•The most recent developments of de novo enzyme design (methodologies and
applications) are reported.•The different chemical reactions for which de novo enzymes …