[HTML][HTML] CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes
J Cheng, X Zeng, G Ren, Z Liu - BMC bioinformatics, 2013 - Springer
Background Chloroplast is an essential organelle in plants which contains independent
genome. Chloroplast genomes have been widely used for plant phylogenetic inference …
genome. Chloroplast genomes have been widely used for plant phylogenetic inference …
CPGView: A package for visualizing detailed chloroplast genome structures
S Liu, Y Ni, J Li, X Zhang, H Yang… - Molecular ecology …, 2023 - Wiley Online Library
Chloroplast genomes have been widely used in studying plant phylogeny and evolution.
Several chloroplast genome visualization tools have been developed to display the …
Several chloroplast genome visualization tools have been developed to display the …
[HTML][HTML] A systematic comparison of chloroplast genome assembly tools
JA Freudenthal, S Pfaff, N Terhoeven, A Korte… - Genome Biology, 2020 - Springer
Background Chloroplasts are intracellular organelles that enable plants to conduct
photosynthesis. They arose through the symbiotic integration of a prokaryotic cell into an …
photosynthesis. They arose through the symbiotic integration of a prokaryotic cell into an …
[HTML][HTML] CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome …
C Liu, L Shi, Y Zhu, H Chen, J Zhang, X Lin, X Guan - BMC genomics, 2012 - Springer
Background The complete sequences of chloroplast genomes provide wealthy information
regarding the evolutionary history of species. With the advance of next-generation …
regarding the evolutionary history of species. With the advance of next-generation …
Assembly, annotation and analysis of chloroplast genomes
X Zhong - 2020 - research-repository.uwa.edu.au
Chloroplast genome data is useful for phylogenetic analyses, for species identification and
for tracing evolutionary adaptations. Current sequencing technology enables us to obtain …
for tracing evolutionary adaptations. Current sequencing technology enables us to obtain …
Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes
MR McKain, RH Hartsock, MM Wohl… - Bioinformatics, 2017 - academic.oup.com
Motivation Chloroplast genomes are now produced in the hundreds for angiosperm
phylogenetics projects, but current methods for annotation, alignment and tree estimation …
phylogenetics projects, but current methods for annotation, alignment and tree estimation …
ChloroplastDB: the chloroplast genome database
L Cui, N Veeraraghavan, A Richter, K Wall… - Nucleic acids …, 2006 - academic.oup.com
Abstract The Chloroplast Genome Database (ChloroplastDB) is an interactive, web-based
database for fully sequenced plastid genomes, containing genomic, protein, DNA and RNA …
database for fully sequenced plastid genomes, containing genomic, protein, DNA and RNA …
Reference-based assembly of chloroplast genome from leaf transcriptome data of Pterocarpus santalinus
Chloroplast genome sequencing is an essential tool to understand genome evolution and
phylogenetic relationship. The available methods for constructing chloroplast genome …
phylogenetic relationship. The available methods for constructing chloroplast genome …
[PDF][PDF] The landscape of chloroplast genome assembly tools
JA Freudenthal, S Pfaff, N Terhoeven, A Korte… - bioRxiv, 2019 - researchgate.net
Chloroplasts are photosynthetic organelles in plant cells and contain their own genomic
information. That genome can be utilized in different scientific fields like phylogenetics or …
information. That genome can be utilized in different scientific fields like phylogenetics or …
[HTML][HTML] Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species
Chloroplast sequences are widely used for phylogenetic analysis due to their high degree of
conservation in plants. Whole chloroplast genomes can now be readily obtained for plant …
conservation in plants. Whole chloroplast genomes can now be readily obtained for plant …