[HTML][HTML] Global methylation patterns and their relationship with gene expression and small RNA in rice lines with different ploidy
HY Zhang, HX Zhao, SH Wu, F Huang, KT Wu… - Frontiers in Plant …, 2016 - frontiersin.org
Whole genome duplication (WGD) is a major force in angiosperm evolution. Whether WGD
is accompanied by the evolution of epigenetic regulators remains to be explored. Here we …
is accompanied by the evolution of epigenetic regulators remains to be explored. Here we …
A comparative epigenomic analysis of polyploidy-derived genes in soybean and common bean
Soybean (Glycine max) and common bean (Phaseolus vulgaris) share a paleopolyploidy
(whole-genome duplication [WGD]) event, approximately 56.5 million years ago, followed by …
(whole-genome duplication [WGD]) event, approximately 56.5 million years ago, followed by …
[HTML][HTML] Gene-body CG methylation and divergent expression of duplicate genes in rice
Gene and genome duplication fosters genetic novelty, but redundant gene copies would
undergo mutational decay unless preserved via selective or neutral forces. Molecular …
undergo mutational decay unless preserved via selective or neutral forces. Molecular …
[HTML][HTML] Contribution of the epigenetic mark H3K27me3 to functional divergence after whole genome duplication in Arabidopsis
Background Following gene duplication, retained paralogs undergo functional divergence,
which is reflected in changes in DNA sequence and expression patterns. The extent of …
which is reflected in changes in DNA sequence and expression patterns. The extent of …
[HTML][HTML] Genome-wide DNA methylation profiling by modified reduced representation bisulfite sequencing in Brassica rapa suggests that epigenetic modifications …
Brassica rapa includes some of the most important vegetables worldwide as well as oilseed
crops. The complete annotated genome sequence confirmed its paleohexaploid origins and …
crops. The complete annotated genome sequence confirmed its paleohexaploid origins and …
[HTML][HTML] Crop epigenomics: identifying, unlocking, and harnessing cryptic variation in crop genomes
DNA methylation is a key chromatin modification in plant genomes that is meiotically and
mitotically heritable, and at times is associated with gene expression and morphological …
mitotically heritable, and at times is associated with gene expression and morphological …
Evolutionary patterns of genic DNA methylation vary across land plants
Little is known about patterns of genic DNA methylation across the plant kingdom or about
the evolutionary processes that shape them. To characterize gene-body methylation (gbM) …
the evolutionary processes that shape them. To characterize gene-body methylation (gbM) …
[HTML][HTML] DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
Epigenome modulation potentially provides a mechanism for organisms to adapt, within and
between generations. However, neither the extent to which this occurs, nor the mechanisms …
between generations. However, neither the extent to which this occurs, nor the mechanisms …
[HTML][HTML] Plant epigenomics—deciphering the mechanisms of epigenetic inheritance and plasticity in plants
C Köhler, N Springer - Genome Biology, 2017 - Springer
It is an exciting time to study plant epigenetics. Technological advances are providing
unprecedented opportunities to monitor chromatin modifications, gene expression, and …
unprecedented opportunities to monitor chromatin modifications, gene expression, and …
Accessing epigenetic variation in the plant methylome
KD Kim, M El Baidouri… - Briefings in Functional …, 2014 - academic.oup.com
Cytosine DNA methylation is the addition of a methyl group to the 5′ position of a cytosine,
which plays a crucial role in plant development and gene silencing. Genome-wide profiling …
which plays a crucial role in plant development and gene silencing. Genome-wide profiling …