ACCDB: A collection of chemistry databases for broad computational purposes

P Morgante, R Peverati - Journal of Computational Chemistry, 2019 - Wiley Online Library
The importance of databases of reliable and accurate data in chemistry has substantially
increased in the past two decades. Their main usage is to parametrize electronic structure …

Enhancing the diversity of a corporate database using chemical database clustering and analysis

NE Shemetulskis, JB Dunbar, BW Dunbar… - Journal of Computer …, 1995 - Springer
The contribution that the Chemical Abstracts structural database (CAST-3D) and the
Maybridge database (MAY) would make to diversifying the structural information and …

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

S Velankar, G van Ginkel, Y Alhroub… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Protein Data Bank in Europe (http://pdbe. org) accepts and annotates
depositions of macromolecular structure data in the PDB and EMDB archives and enriches …

The Chemistry Development Kit (CDK): An open-source Java library for chemo-and bioinformatics

C Steinbeck, Y Han, S Kuhn, O Horlacher… - Journal of chemical …, 2003 - ACS Publications
The Chemistry Development Kit (CDK) is a freely available open-source Java library for
Structural Chemo-and Bioinformatics. Its architecture and capabilities as well as the …

Platform for unified molecular analysis: PUMA

M Gonzalez-Medina… - Journal of chemical …, 2017 - ACS Publications
We introduce a free platform for chemoinformatic-based diversity analysis and visualization
of chemical space of user supplied data sets. Platform for Unified Molecular Analysis …

[HTML][HTML] Natural product-likeness score revisited: an open-source, open-data implementation

K Vanii Jayaseelan, P Moreno, A Truszkowski, P Ertl… - BMC …, 2012 - Springer
Background Natural product-likeness of a molecule, ie similarity of this molecule to the
structure space covered by natural products, is a useful criterion in screening compound …

The chemical space project

JL Reymond - Accounts of chemical research, 2015 - ACS Publications
Conspectus One of the simplest questions that can be asked about molecular diversity is
how many organic molecules are possible in total? To answer this question, my research …

[HTML][HTML] InChI, the IUPAC international chemical identifier

SR Heller, A McNaught, I Pletnev, S Stein… - Journal of …, 2015 - Springer
InChI, the IUPAC International Chemical Identifier | Journal of Cheminformatics Skip to main
content SpringerLink Account Menu Find a journal Publish with us Track your research Search …

molSimplify: A toolkit for automating discovery in inorganic chemistry

EI Ioannidis, TZH Gani, HJ Kulik - 2016 - Wiley Online Library
We present an automated, open source toolkit for the first‐principles screening and
discovery of new inorganic molecules and intermolecular complexes. Challenges remain in …

[HTML][HTML] TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data

D Sydow, A Morger, M Driller, A Volkamer - Journal of cheminformatics, 2019 - Springer
Owing to the increase in freely available software and data for cheminformatics and
structural bioinformatics, research for computer-aided drug design (CADD) is more and …