PUG-SOAP and PUG-REST: web services for programmatic access to chemical information in PubChem

S Kim, PA Thiessen, EE Bolton… - Nucleic acids …, 2015 - academic.oup.com
Abstract PubChem (http://pubchem. ncbi. nlm. nih. gov) is a public repository for information
on chemical substances and their biological activities, developed and maintained by the US …

SMIfp (SMILES fingerprint) chemical space for virtual screening and visualization of large databases of organic molecules

J Schwartz, M Awale, JL Reymond - Journal of chemical …, 2013 - ACS Publications
SMIfp (SMILES fingerprint) is defined here as a scalar fingerprint describing organic
molecules by counting the occurrences of 34 different symbols in their SMILES strings …

[HTML][HTML] International chemical identifier for reactions (RInChI)

G Grethe, G Blanke, H Kraut, JM Goodman - Journal of cheminformatics, 2018 - Springer
Abstract The Reaction InChI (RInChI) extends the idea of the InChI, which provides a unique
descriptor of molecular structures, towards reactions. Prototype versions of the RInChI have …

The role of computer-assisted structure elucidation (CASE) programs in the structure elucidation of complex natural products

DC Burns, EP Mazzola, WF Reynolds - Natural product reports, 2019 - pubs.rsc.org
Covering: up to the end of December, 2018 There are still a disturbing number of incorrect
natural product structure elucidations reported in the literature. The use of Computer …

[HTML][HTML] SAVI, in silico generation of billions of easily synthesizable compounds through expert-system type rules

H Patel, WD Ihlenfeldt, PN Judson, YS Moroz… - Scientific data, 2020 - nature.com
We have made available a database of over 1 billion compounds predicted to be easily
synthesizable, called Synthetically Accessible Virtual Inventory (SAVI). They have been …

MMsINC: a large-scale chemoinformatics database

J Masciocchi, G Frau, M Fanton, M Sturlese… - Nucleic Acids …, 2009 - academic.oup.com
Abstract MMsINC (http://mms. dsfarm. unipd. it/MMsINC/search) is a database of non-
redundant, richly annotated and biomedically relevant chemical structures. A primary goal of …

Representation of chemical structures

WA Warr - Wiley Interdisciplinary Reviews: Computational …, 2011 - Wiley Online Library
At the root of applications for substructure and similarity searching, reaction retrieval,
synthesis planning, drug discovery, and physicochemical property prediction is the need for …

ChemSpider: the free chemical database

M Ayers - Reference reviews, 2012 - emerald.com
ChemSpider provides access to over 26 million structures with data and information
imported from many scientific, industrial and research based data sources. This free …

Chemicalize. org

M Swain - 2012 - ACS Publications
chemicalize. org by ChemAxon is a free Web-based resource that adds extra contextual
chemical information into Web pages and documents. When one “chemicalizes” a Web …

Structure modification in chemical databases

PW Kenny, J Sadowski - Chemoinformatics in drug discovery, 2005 - Wiley Online Library
In chemical database applications, preserving the integrity of structures is normally of
paramount importance. Accurate and efficient structure retrieval is the main function of a …