Genome-Wide Association Studies with a Genomic Relationship Matrix: A Case Study with Wheat and Arabidopsis

D Gianola, MI Fariello, H Naya… - G3: Genes, Genomes …, 2016 - academic.oup.com
Standard genome-wide association studies (GWAS) scan for relationships between each of
p molecular markers and a continuously distributed target trait. Typically, a marker-based …

The Use of Targeted Marker Subsets to Account for Population Structure and Relatedness in Genome-Wide Association Studies of Maize (Zea mays L.)

AH Chen, AE Lipka - G3: Genes, Genomes, Genetics, 2016 - academic.oup.com
A typical plant genome-wide association study (GWAS) uses a mixed linear model (MLM)
that includes a trait as the response variable, a marker as an explanatory variable, and fixed …

[HTML][HTML] Incorporating genetic heterogeneity in whole-genome regressions using interactions

G de Los Campos, Y Veturi, AI Vazquez… - Journal of agricultural …, 2015 - Springer
Naturally and artificially selected populations usually exhibit some degree of stratification. In
Genome-Wide Association Studies and in Whole-Genome Regressions (WGR) analyses …

[图书][B] Genome-wide association studies

D Torkamaneh, F Belzile - 2022 - Springer
Genome-wide association studies (GWAS) have revolutionized the investigation of complex
traits over the past decade and have unveiled numerous useful genotype–phenotype …

Statistical genetic issues for genome-wide association studies

BS Weir - Genome, 2010 - cdnsciencepub.com
Genotyping technology now allows the rapid and affordable generation of million-SNP
profiles for humans, leading to considerable activity in association mapping. Similar activity …

[HTML][HTML] Genome-wide association studies in plants: the missing heritability is in the field

B Brachi, GP Morris, JO Borevitz - Genome biology, 2011 - Springer
Genome-wide association studies in plants: the missing heritability is in the field | Genome
Biology Skip to main content SpringerLink Account Menu Find a journal Publish with us …

Epistasis and covariance: how gene interaction translates into genomic relationship

JWR Martini, V Wimmer, M Erbe, H Simianer - Theoretical and Applied …, 2016 - Springer
Key message Models based on additive marker effects and on epistatic interactions can be
translated into genomic relationship models. This equivalence allows to perform predictions …

Genome-wide association mapping in plants

AW George, C Cavanagh - Theoretical and Applied Genetics, 2015 - Springer
Key message We present new association mapping methods which address the unique
challenges of analyzing genome-wide data from multi-environment plant studies. Abstract …

Naturalgwas: An R package for evaluating genomewide association methods with empirical data

O François, K Caye - Molecular ecology resources, 2018 - Wiley Online Library
Association studies of polygenic traits are notoriously difficult when those studies are
conducted at large geographic scales. The difficulty arises as genotype frequencies often …

Simulation appraisal of the adequacy of number of background markers for relationship estimation in association mapping

J Yu, Z Zhang, C Zhu, DA Tabanao… - The Plant …, 2009 - Wiley Online Library
Complex trait dissection through association mapping provides a powerful complement to
traditional linkage analysis. The genetic structure of an association mapping panel can be …