[HTML][HTML] Bootstrap study of genome-enabled prediction reliabilities using haplotype blocks across Nordic Red cattle breeds
This study compared the accuracy of genome-enabled prediction models using individual
single nucleotide polymorphisms (SNP) or haplotype blocks as covariates when using either …
single nucleotide polymorphisms (SNP) or haplotype blocks as covariates when using either …
A function accounting for training set size and marker density to model the average accuracy of genomic prediction
M Erbe, B Gredler, FR Seefried, B Bapst, H Simianer - PLoS One, 2013 - journals.plos.org
Prediction of genomic breeding values is of major practical relevance in dairy cattle
breeding. Deterministic equations have been suggested to predict the accuracy of genomic …
breeding. Deterministic equations have been suggested to predict the accuracy of genomic …
Influence of model specifications on the reliabilities of genomic prediction in a Swedish–Finnish red breed cattle population
E Rius‐Vilarrasa, RF Brøndum… - Journal of Animal …, 2012 - Wiley Online Library
Using a combined multi‐breed reference population, this study explored the influence of
model specification and the effect of including a polygenic effect on the reliability of genomic …
model specification and the effect of including a polygenic effect on the reliability of genomic …
Accuracy of genome-enabled prediction in a dairy cattle population using different cross-validation layouts
MA Pérez-Cabal, AI Vazquez, D Gianola… - Frontiers in …, 2012 - frontiersin.org
The impact of extent of genetic relatedness on accuracy of genome-enabled predictions was
assessed using a dairy cattle population and alternative cross-validation (CV) strategies …
assessed using a dairy cattle population and alternative cross-validation (CV) strategies …
Genomic predictions across Nordic Holstein and Nordic Red using the genomic best linear unbiased prediction model with different genomic relationship matrices
This study investigated genomic predictions across Nordic Holstein and Nordic Red using
various genomic relationship matrices. Different sources of information, such as …
various genomic relationship matrices. Different sources of information, such as …
Fixed-length haplotypes can improve genomic prediction accuracy in an admixed dairy cattle population
Background Fitting covariates representing the number of haplotype alleles rather than
single nucleotide polymorphism (SNP) alleles may increase genomic prediction accuracy if …
single nucleotide polymorphism (SNP) alleles may increase genomic prediction accuracy if …
Genomic prediction of genetic merit using LD-based haplotypes in the Nordic Holstein population
BCD Cuyabano, G Su, MS Lund - BMC genomics, 2014 - Springer
Background A haplotype approach to genomic prediction using high density data in dairy
cattle as an alternative to single-marker methods is presented. With the assumption that …
cattle as an alternative to single-marker methods is presented. With the assumption that …
[PDF][PDF] Assessment of cross-validation strategies for genomic prediction in cattle
M Erbe, ECG Pimentel, AR Sharifi… - Accuracy of Genomic …, 2013 - d-nb.info
The basic idea of cross-validation procedures is to divide a data set into a reference and a
validation set, to omit any kind of information of the validation set and to predict this …
validation set, to omit any kind of information of the validation set and to predict this …
Correcting for base-population differences and unknown parent groups in single-step genomic predictions of Norwegian Red cattle
TK Belay, LS Eikje, AB Gjuvsland… - Journal of Animal …, 2022 - academic.oup.com
Bias and inflation in genomic evaluation with the single-step methods have been reported in
several studies. Incompatibility between the base-populations of the pedigree-based and …
several studies. Incompatibility between the base-populations of the pedigree-based and …
[HTML][HTML] Reliabilities of genomic prediction using combined reference data of the Nordic Red dairy cattle populations
This study investigated the possibility of increasing the reliability of direct genomic values
(DGV) by combining reference populations. The data were from 3,735 bulls from Danish …
(DGV) by combining reference populations. The data were from 3,735 bulls from Danish …