[HTML][HTML] Bootstrap study of genome-enabled prediction reliabilities using haplotype blocks across Nordic Red cattle breeds

BCD Cuyabano, G Su, GJM Rosa, MS Lund… - Journal of Dairy …, 2015 - Elsevier
This study compared the accuracy of genome-enabled prediction models using individual
single nucleotide polymorphisms (SNP) or haplotype blocks as covariates when using either …

A function accounting for training set size and marker density to model the average accuracy of genomic prediction

M Erbe, B Gredler, FR Seefried, B Bapst, H Simianer - PLoS One, 2013 - journals.plos.org
Prediction of genomic breeding values is of major practical relevance in dairy cattle
breeding. Deterministic equations have been suggested to predict the accuracy of genomic …

Influence of model specifications on the reliabilities of genomic prediction in a Swedish–Finnish red breed cattle population

E Rius‐Vilarrasa, RF Brøndum… - Journal of Animal …, 2012 - Wiley Online Library
Using a combined multi‐breed reference population, this study explored the influence of
model specification and the effect of including a polygenic effect on the reliability of genomic …

Accuracy of genome-enabled prediction in a dairy cattle population using different cross-validation layouts

MA Pérez-Cabal, AI Vazquez, D Gianola… - Frontiers in …, 2012 - frontiersin.org
The impact of extent of genetic relatedness on accuracy of genome-enabled predictions was
assessed using a dairy cattle population and alternative cross-validation (CV) strategies …

Genomic predictions across Nordic Holstein and Nordic Red using the genomic best linear unbiased prediction model with different genomic relationship matrices

L Zhou, MS Lund, Y Wang, G Su - Journal of animal breeding …, 2014 - Wiley Online Library
This study investigated genomic predictions across Nordic Holstein and Nordic Red using
various genomic relationship matrices. Different sources of information, such as …

Fixed-length haplotypes can improve genomic prediction accuracy in an admixed dairy cattle population

M Hess, T Druet, A Hess, D Garrick - Genetics Selection Evolution, 2017 - Springer
Background Fitting covariates representing the number of haplotype alleles rather than
single nucleotide polymorphism (SNP) alleles may increase genomic prediction accuracy if …

Genomic prediction of genetic merit using LD-based haplotypes in the Nordic Holstein population

BCD Cuyabano, G Su, MS Lund - BMC genomics, 2014 - Springer
Background A haplotype approach to genomic prediction using high density data in dairy
cattle as an alternative to single-marker methods is presented. With the assumption that …

[PDF][PDF] Assessment of cross-validation strategies for genomic prediction in cattle

M Erbe, ECG Pimentel, AR Sharifi… - Accuracy of Genomic …, 2013 - d-nb.info
The basic idea of cross-validation procedures is to divide a data set into a reference and a
validation set, to omit any kind of information of the validation set and to predict this …

Correcting for base-population differences and unknown parent groups in single-step genomic predictions of Norwegian Red cattle

TK Belay, LS Eikje, AB Gjuvsland… - Journal of Animal …, 2022 - academic.oup.com
Bias and inflation in genomic evaluation with the single-step methods have been reported in
several studies. Incompatibility between the base-populations of the pedigree-based and …

[HTML][HTML] Reliabilities of genomic prediction using combined reference data of the Nordic Red dairy cattle populations

RF Brøndum, E Rius-Vilarrasa, I Strandén, G Su… - Journal of dairy …, 2011 - Elsevier
This study investigated the possibility of increasing the reliability of direct genomic values
(DGV) by combining reference populations. The data were from 3,735 bulls from Danish …