[PDF][PDF] Plant phenomics, from sensors to knowledge

F Tardieu, L Cabrera-Bosquet, T Pridmore, M Bennett - Current Biology, 2017 - cell.com
Major improvements in crop yield are needed to keep pace with population growth and
climate change. While plant breeding efforts have greatly benefited from advances in …

MIPS PlantsDB: a database framework for comparative plant genome research

T Nussbaumer, MM Martis, SK Roessner… - Nucleic acids …, 2012 - academic.oup.com
The rapidly increasing amount of plant genome (sequence) data enables powerful
comparative analyses and integrative approaches and also requires structured and …

[PDF][PDF] Unlocking plant metabolic diversity: A (pan)-genomic view

X Zhou, Z Liu - Plant Communications, 2022 - cell.com
Plants produce a remarkable diversity of structurally and functionally diverse natural
chemicals that serve as adaptive compounds throughout their life cycles. However …

Leafing through the genomes of our major crop plants: strategies for capturing unique information

AH Paterson - Nature Reviews Genetics, 2006 - nature.com
Crop plants not only have economic significance, but also comprise important botanical
models for evolution and development. This is reflected by the recent increase in the …

MIPSPlantsDB—plant database resource for integrative and comparative plant genome research

M Spannagl, O Noubibou, D Haase… - Nucleic Acids …, 2007 - academic.oup.com
Genome-oriented plant research delivers rapidly increasing amount of plant genome data.
Comprehensive and structured information resources are required to structure and …

[HTML][HTML] Genome-wide identification of lineage-specific genes in Arabidopsis, Oryza and Populus

X Yang, S Jawdy, TJ Tschaplinski, GA Tuskan - Genomics, 2009 - Elsevier
Protein sequences were compared among Arabidopsis, Oryza and Populus to identify
differential gene (DG) sets that are in one but not the other two genomes. The DG sets were …

The potential of genomics in plant systematics

DE Soltis, MA Gitzendanner, G Stull, M Chester… - Taxon, 2013 - Wiley Online Library
Next‐generation sequencing (NGS) has revolutionized molecular systematics as well as
population and conservation genetics. It is now possible to obtain enormous amounts of …

[HTML][HTML] Harnessing genebanks: High-throughput phenotyping and genotyping of crop wild relatives and landraces

AJ Cortés, JY Barnaby - Frontiers in Plant Science, 2023 - frontiersin.org
Worldwide genebanks hold phenotypic and genetic novelty useful to increase yield, crop
adaptability, and agrobiodiversity (Tanksley and McCouch, 1997) while buffering crop …

[PDF][PDF] A review of pangenome tools and recent studies

GS Vernikos - The pangenome: diversity, dynamics and evolution …, 2020 - library.oapen.org
With the advance of sequencing technologies, the landscape of genomic analysis has been
transformed, by moving from single strain to species (or even higher taxa)-wide genomic …

[HTML][HTML] Maize pan-transcriptome provides novel insights into genome complexity and quantitative trait variation

M Jin, H Liu, C He, J Fu, Y Xiao, Y Wang, W Xie… - Scientific reports, 2016 - nature.com
Gene expression variation largely contributes to phenotypic diversity and constructing pan-
transcriptome is considered necessary for species with complex genomes. However, the …