SmProt: a database of small proteins encoded by annotated coding and non-coding RNA loci
Small proteins is the general term for proteins with length shorter than 100 amino acids.
Identification and functional studies of small proteins have advanced rapidly in recent years …
Identification and functional studies of small proteins have advanced rapidly in recent years …
SmProt: a reliable repository with comprehensive annotation of small proteins identified from ribosome profiling
Y Li, H Zhou, X Chen, Y Zheng, Q Kang… - Genomics …, 2021 - academic.oup.com
Small proteins specifically refer to proteins consisting of less than 100 amino acids
translated from small open reading frames (sORFs), which were usually missed in previous …
translated from small open reading frames (sORFs), which were usually missed in previous …
Identification of prokaryotic small proteins using a comparative genomic approach
J Samayoa, FH Yildiz, K Karplus - Bioinformatics, 2011 - academic.oup.com
Motivation: Accurate prediction of genes encoding small proteins (on the order of 50 amino
acids or less) remains an elusive open problem in bioinformatics. Some of the best methods …
acids or less) remains an elusive open problem in bioinformatics. Some of the best methods …
[HTML][HTML] Small proteins: untapped area of potential biological importance
Polypeptides containing≤ 100 amino acid residues (AAs) are generally considered to be
small proteins (SPs). Many studies have shown that some SPs are involved in important …
small proteins (SPs). Many studies have shown that some SPs are involved in important …
[HTML][HTML] Large-scale analyses of human microbiomes reveal thousands of small, novel genes
Small proteins are traditionally overlooked due to computational and experimental
difficulties in detecting them. To systematically identify small proteins, we carried out a …
difficulties in detecting them. To systematically identify small proteins, we carried out a …
[HTML][HTML] The small protein floodgates are opening; now the functional analysis begins
KS Ramamurthi, G Storz - BMC biology, 2014 - Springer
Aside from a few serendipitous discoveries, small proteins of less than 50 amino acids in
bacteria and 100 amino acids in eukaryotes were largely ignored due to challenges in their …
bacteria and 100 amino acids in eukaryotes were largely ignored due to challenges in their …
The largely unexplored biology of small proteins in pro‐and eukaryotes
R Steinberg, HG Koch - The FEBS journal, 2021 - Wiley Online Library
The large abundance of small open reading frames (smORFs) in prokaryotic and eukaryotic
genomes and the plethora of smORF‐encoded small proteins became only apparent with …
genomes and the plethora of smORF‐encoded small proteins became only apparent with …
EnsMart: a generic system for fast and flexible access to biological data
The EnsMart system (www. ensembl. org/EnsMart) provides a generic data warehousing
solution for fast and flexible querying of large biological data sets and integration with third …
solution for fast and flexible querying of large biological data sets and integration with third …
[HTML][HTML] Minireview: novel micropeptide discovery by proteomics and deep sequencing methods
R Tharakan, A Sawa - Frontiers in genetics, 2021 - frontiersin.org
A novel class of small proteins, called micropeptides, has recently been discovered in the
genome. These proteins, which have been found to play important roles in many …
genome. These proteins, which have been found to play important roles in many …
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products
PP Kuksa, A Amlie-Wolf, Ž Katanić, O Valladares… - …, 2019 - academic.oup.com
Abstract Motivation Small non-coding RNAs (sncRNAs,< 100 nts) are highly abundant RNAs
that regulate diverse and often tissue-specific cellular processes by associating with …
that regulate diverse and often tissue-specific cellular processes by associating with …