SmProt: a database of small proteins encoded by annotated coding and non-coding RNA loci

Y Hao, L Zhang, Y Niu, T Cai, J Luo, S He… - Briefings in …, 2018 - academic.oup.com
Small proteins is the general term for proteins with length shorter than 100 amino acids.
Identification and functional studies of small proteins have advanced rapidly in recent years …

SmProt: a reliable repository with comprehensive annotation of small proteins identified from ribosome profiling

Y Li, H Zhou, X Chen, Y Zheng, Q Kang… - Genomics …, 2021 - academic.oup.com
Small proteins specifically refer to proteins consisting of less than 100 amino acids
translated from small open reading frames (sORFs), which were usually missed in previous …

Identification of prokaryotic small proteins using a comparative genomic approach

J Samayoa, FH Yildiz, K Karplus - Bioinformatics, 2011 - academic.oup.com
Motivation: Accurate prediction of genes encoding small proteins (on the order of 50 amino
acids or less) remains an elusive open problem in bioinformatics. Some of the best methods …

[HTML][HTML] Small proteins: untapped area of potential biological importance

M Su, Y Ling, J Yu, J Wu, J Xiao - Frontiers in genetics, 2013 - frontiersin.org
Polypeptides containing≤ 100 amino acid residues (AAs) are generally considered to be
small proteins (SPs). Many studies have shown that some SPs are involved in important …

[HTML][HTML] Large-scale analyses of human microbiomes reveal thousands of small, novel genes

H Sberro, BJ Fremin, S Zlitni, F Edfors, N Greenfield… - Cell, 2019 - cell.com
Small proteins are traditionally overlooked due to computational and experimental
difficulties in detecting them. To systematically identify small proteins, we carried out a …

[HTML][HTML] The small protein floodgates are opening; now the functional analysis begins

KS Ramamurthi, G Storz - BMC biology, 2014 - Springer
Aside from a few serendipitous discoveries, small proteins of less than 50 amino acids in
bacteria and 100 amino acids in eukaryotes were largely ignored due to challenges in their …

The largely unexplored biology of small proteins in pro‐and eukaryotes

R Steinberg, HG Koch - The FEBS journal, 2021 - Wiley Online Library
The large abundance of small open reading frames (smORFs) in prokaryotic and eukaryotic
genomes and the plethora of smORF‐encoded small proteins became only apparent with …

EnsMart: a generic system for fast and flexible access to biological data

A Kasprzyk, D Keefe, D Smedley, D London… - Genome …, 2004 - genome.cshlp.org
The EnsMart system (www. ensembl. org/EnsMart) provides a generic data warehousing
solution for fast and flexible querying of large biological data sets and integration with third …

[HTML][HTML] Minireview: novel micropeptide discovery by proteomics and deep sequencing methods

R Tharakan, A Sawa - Frontiers in genetics, 2021 - frontiersin.org
A novel class of small proteins, called micropeptides, has recently been discovered in the
genome. These proteins, which have been found to play important roles in many …

DASHR 2.0: integrated database of human small non-coding RNA genes and mature products

PP Kuksa, A Amlie-Wolf, Ž Katanić, O Valladares… - …, 2019 - academic.oup.com
Abstract Motivation Small non-coding RNAs (sncRNAs,< 100 nts) are highly abundant RNAs
that regulate diverse and often tissue-specific cellular processes by associating with …