Global regulatory features of alternative splicing across tissues and within the nervous system of C. elegans

B Koterniak, PP Pilaka, X Gracida… - Genome …, 2020 - genome.cshlp.org
Alternative splicing plays a major role in shaping tissue-specific transcriptomes. Among the
broad tissue types present in metazoans, the central nervous system contains some of the …

[HTML][HTML] Pre-mRNA splicing and its regulation in Caenorhabditis elegans

AM Zahler - WormBook: The Online Review of C. elegans Biology …, 2018 - ncbi.nlm.nih.gov
Alternative splicing is a common mechanism for the generation of multiple isoforms of
proteins. It can function to expand the proteome of an organism and can serve as a way to …

Coordinated tissue-specific regulation of adjacent alternative 3′ splice sites in C. elegans

JM Ragle, S Katzman, TF Akers… - Genome …, 2015 - genome.cshlp.org
Adjacent alternative 3′ splice sites, those separated by≤ 18 nucleotides, provide a unique
problem in the study of alternative splicing regulation; there is overlap of the cis-elements …

Position-dependent and neuron-specific splicing regulation by the CELF family RNA-binding protein UNC-75 in Caenorhabditis elegans

H Kuroyanagi, Y Watanabe, Y Suzuki… - Nucleic acids …, 2013 - academic.oup.com
A large fraction of protein-coding genes in metazoans undergo alternative pre-mRNA
splicing in tissue-or cell-type-specific manners. Recent genome-wide approaches have …

Genome-wide analysis of alternative splicing in Caenorhabditis elegans

AK Ramani, JA Calarco, Q Pan, S Mavandadi… - Genome …, 2011 - genome.cshlp.org
Alternative splicing (AS) plays a crucial role in the diversification of gene function and
regulation. Consequently, the systematic identification and characterization of temporally …

Regulation of Tissue-Specific Alternative Splicing: C. elegans as a Model System

X Gracida, AD Norris, JA Calarco - RNA Processing: Disease and Genome …, 2016 - Springer
Alternative pre-mRNA splicing serves as an elegant mechanism for generating
transcriptomic and proteomic diversity between cell and tissue types. In this chapter, we …

[HTML][HTML] Intronic alternative splicing regulators identified by comparative genomics in nematodes

JL Kabat, S Barberan-Soler, P McKenna… - PLoS computational …, 2006 - journals.plos.org
Many alternative splicing events are regulated by pentameric and hexameric intronic
sequences that serve as binding sites for splicing regulatory factors. We hypothesized that …

[HTML][HTML] The combinatorial control of alternative splicing in C. elegans

JH Tan, AG Fraser - PLoS genetics, 2017 - journals.plos.org
Normal development requires the right splice variants to be made in the right tissues at the
right time. The core splicing machinery is engaged in all splicing events, but which precise …

Widespread Evolutionary Conservation of Alternatively Spliced Exons in Caenorhabditis

M Irimia, JL Rukov, D Penny… - Molecular Biology …, 2008 - academic.oup.com
Alternative splicing (AS) contributes to increased transcriptome and proteome diversity in
various eukaryotic lineages. Previous studies showed low levels of conservation of …

[HTML][HTML] Alternative Splicing Regulation During C. elegans Development: Splicing Factors as Regulated Targets

S Barberan-Soler, AM Zahler - PLoS genetics, 2008 - journals.plos.org
Alternative splicing generates protein diversity and allows for post-transcriptional gene
regulation. Estimates suggest that 10% of the genes in Caenorhabditis elegans undergo …