Artificial intelligence and machine learning methods in predicting anti-cancer drug combination effects

K Fan, L Cheng, L Li - Briefings in bioinformatics, 2021 - academic.oup.com
Drug combinations have exhibited promising therapeutic effects in treating cancer patients
with less toxicity and adverse side effects. However, it is infeasible to experimentally screen …

DCE‐DForest: A Deep Forest Model for the Prediction of Anticancer Drug Combination Effects

W Zhang, Z Xue, Z Li, H Yin - Computational and Mathematical …, 2022 - Wiley Online Library
Drug combinations have recently been studied intensively due to their critical role in cancer
treatment. Computational prediction of drug synergy has become a popular alternative …

[HTML][HTML] Deep learning-based multi-drug synergy prediction model for individually tailored anti-cancer therapies

S She, H Chen, W Ji, M Sun, J Cheng, M Rui… - Frontiers in …, 2022 - frontiersin.org
While synergistic drug combinations are more effective at fighting tumors with complex
pathophysiology, preference compensating mechanisms, and drug resistance, the …

Predicting synergistic anticancer drug combination based on low-rank global attention mechanism and bilinear predictor

Y Gan, X Huang, W Guo, C Yan, G Zou - Bioinformatics, 2023 - academic.oup.com
Motivation Drug combination therapy has exhibited remarkable therapeutic efficacy and has
gradually become a promising clinical treatment strategy of complex diseases such as …

Prediction of synergistic anti-cancer drug combinations based on drug target network and drug induced gene expression profiles

X Li, Y Xu, H Cui, T Huang, D Wang, B Lian, W Li… - Artificial intelligence in …, 2017 - Elsevier
Objective Synergistic drug combinations are promising therapies for cancer treatment.
However, effective prediction of synergistic drug combinations is quite challenging as …

A review of machine learning approaches for drug synergy prediction in cancer

A Torkamannia, Y Omidi… - Briefings in Bioinformatics, 2022 - academic.oup.com
Combinational pharmacotherapy with the synergistic/additive effect is a powerful treatment
strategy for complex diseases such as malignancies. Identifying synergistic combinations …

DeepSynergy: predicting anti-cancer drug synergy with Deep Learning

K Preuer, RPI Lewis, S Hochreiter, A Bender… - …, 2018 - academic.oup.com
Motivation While drug combination therapies are a well-established concept in cancer
treatment, identifying novel synergistic combinations is challenging due to the size of …

[HTML][HTML] Interpreting the mechanism of synergism for drug combinations using attention-based hierarchical graph pooling

Z Dong, H Zhang, Y Chen, PRO Payne, F Li - Cancers, 2023 - mdpi.com
Simple Summary This paper introduces a novel graph neural network (a hierarchical graph
pooling model), SANEpool, to effectively detect core sub-networks of significant genes for …

AttenSyn: an attention-based deep graph neural network for anticancer synergistic drug combination prediction

T Wang, R Wang, L Wei - Journal of Chemical Information and …, 2023 - ACS Publications
Identifying synergistic drug combinations is fundamentally important to treat a variety of
complex diseases while avoiding severe adverse drug–drug interactions. Although several …

CCSynergy: an integrative deep-learning framework enabling context-aware prediction of anti-cancer drug synergy

SR Hosseini, X Zhou - Briefings in bioinformatics, 2023 - academic.oup.com
Combination therapy is a promising strategy for confronting the complexity of cancer.
However, experimental exploration of the vast space of potential drug combinations is costly …