Non-model organisms, a species endangered by proteogenomics

J Armengaud, J Trapp, O Pible, O Geffard… - Journal of …, 2014 - Elsevier
Previously, large-scale proteomics was possible only for organisms whose genomes were
sequenced, meaning the most common model organisms. The use of next-generation …

dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications

Z Li, S Li, M Luo, JH Jhong, W Li, L Yao… - Nucleic acids …, 2022 - academic.oup.com
Protein post-translational modifications (PTMs) play an important role in different cellular
processes. In view of the importance of PTMs in cellular functions and the massive data …

PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins

P Minguez, I Letunic, L Parca, P Bork - Nucleic acids research, 2012 - academic.oup.com
Post-translational modifications (PTMs) are involved in the regulation and structural
stabilization of eukaryotic proteins. The combination of individual PTM states is a key to …

Characterizing post-translational modifications and their effects on protein conformation using NMR spectroscopy

A Kumar, V Narayanan, A Sekhar - Biochemistry, 2019 - ACS Publications
The diversity of the cellular proteome substantially exceeds the number of genes coded by
the DNA of an organism because one or more residues in a majority of eukaryotic proteins …

Environmental proteomics: analysis of structure and function of microbial communities

T Schneider, K Riedel - Proteomics, 2010 - Wiley Online Library
Prokaryotic and eukaryotic microorganisms make a vital contribution to biogeochemical
cycles by decomposing virtually all natural compounds and thereby exert a lasting effect on …

ProteomeTools: Systematic characterization of 21 post-translational protein modifications by liquid chromatography tandem mass spectrometry (LC-MS/MS) using …

DP Zolg, M Wilhelm, T Schmidt, G Médard… - Molecular & Cellular …, 2018 - ASBMB
The analysis of the post-translational modification (PTM) state of proteins using mass
spectrometry-based bottom-up proteomic workflows has evolved into a powerful tool for the …

Proteomics meets microbiology: technical advances in the global mapping of protein expression and function

CI Phillips, M Bogyo - Cellular microbiology, 2005 - Wiley Online Library
The availability of complete genome sequences for a large number of pathogenic organisms
has opened the door for large‐scale proteomic studies to dissect both protein …

[图书][B] Posttranslational modification of proteins: expanding nature's inventory

C Walsh - 2006 - books.google.com
The number of protein isoforms in proteomes can be two to three orders of magnitude higher
than the number of genes in the genomes. This is in large part due to posttranslational …

Activity-based protein profiling of microbes

NC Sadler, AT Wright - Current opinion in chemical biology, 2015 - Elsevier
Highlights•ABPP enabled proteomics and imaging provides insight into microbial
physiology.•Microbe functions, drug interactions, and pathways are revealed by …

SysPTM: a systematic resource for proteomic research on post-translational modifications

H Li, X Xing, G Ding, Q Li, C Wang, L Xie… - Molecular & Cellular …, 2009 - ASBMB
With the rapid expansion of protein post-translational modification (PTM) research based on
large-scale proteomic work, there is an increasing demand for a suitable repository to …