Characterizing disease-associated changes in post-translational modifications by mass spectrometry
C Thygesen, I Boll, B Finsen, M Modzel… - Expert review of …, 2018 - Taylor & Francis
Introduction: Exploring post-translational modifications (PTMs) with the use of mass
spectrometry (PTMomics) is a rapidly developing area, with methods for discovery …
spectrometry (PTMomics) is a rapidly developing area, with methods for discovery …
Ser/Thr/Tyr phosphoproteome analysis of pathogenic and non‐pathogenic Pseudomonas species
A Ravichandran, N Sugiyama, M Tomita… - …, 2009 - Wiley Online Library
Protein phosphorylation on serine, threonine, and tyrosine is well established as a crucial
regulatory posttranslational modification in eukaryotes. With the recent whole‐genome …
regulatory posttranslational modification in eukaryotes. With the recent whole‐genome …
dbPTM: an information repository of protein post-translational modification
Abstract dbPTM is a database that compiles information on protein post-translational
modifications (PTMs), such as the catalytic sites, solvent accessibility of amino acid residues …
modifications (PTMs), such as the catalytic sites, solvent accessibility of amino acid residues …
Exoproteomics: exploring the world around biological systems
The term 'exoproteome'describes the protein content that can be found in the extracellular
proximity of a given biological system. These proteins arise from cellular secretion, other …
proximity of a given biological system. These proteins arise from cellular secretion, other …
[HTML][HTML] Characterization of the E. coli proteome and its modifications during growth and ethanol stress
We set out to provide a resource to the microbiology community especially with respect to
systems biology based endeavors. To this end, we generated a comprehensive dataset …
systems biology based endeavors. To this end, we generated a comprehensive dataset …
Metaproteomics of our microbiome—developing insight in function and activity in man and model systems
CA Kolmeder, WM de Vos - Journal of proteomics, 2014 - Elsevier
We are all colonized by a large microbiome, a complex set of microbes that have intimate
associations with us. Culture-based approaches have provided insights in the complexity of …
associations with us. Culture-based approaches have provided insights in the complexity of …
Characterization of N-terminal protein modifications in Pseudomonas aeruginosa PA14
Even though protein initiator methionine excision (NME) and N-terminal acetylation (NTA)
have been relatively well investigated in eukaryotic proteomes, few studies were dedicated …
have been relatively well investigated in eukaryotic proteomes, few studies were dedicated …
Absolute quantification of microbial proteomes at different states by directed mass spectrometry
Over the past decade, liquid chromatography coupled with tandem mass spectrometry (LC–
MS/MS) has evolved into the main proteome discovery technology. Up to several thousand …
MS/MS) has evolved into the main proteome discovery technology. Up to several thousand …
[HTML][HTML] Clinically relevant post-translational modification analyses—maturing workflows and bioinformatics tools
Post-translational modifications (PTMs) can occur soon after translation or at any stage in
the lifecycle of a given protein, and they may help regulate protein folding, stability, cellular …
the lifecycle of a given protein, and they may help regulate protein folding, stability, cellular …
Bacterial phosphoproteomic analysis reveals the correlation between protein phosphorylation and bacterial pathogenicity
R Ge, W Shan - Genomics, Proteomics and Bioinformatics, 2011 - academic.oup.com
Increasing evidence shows that protein phosphorylation on serine, threonine and tyrosine
residues is a major regulatory post-translational modification in the bacteria. This review …
residues is a major regulatory post-translational modification in the bacteria. This review …