Characterizing disease-associated changes in post-translational modifications by mass spectrometry

C Thygesen, I Boll, B Finsen, M Modzel… - Expert review of …, 2018 - Taylor & Francis
Introduction: Exploring post-translational modifications (PTMs) with the use of mass
spectrometry (PTMomics) is a rapidly developing area, with methods for discovery …

Ser/Thr/Tyr phosphoproteome analysis of pathogenic and non‐pathogenic Pseudomonas species

A Ravichandran, N Sugiyama, M Tomita… - …, 2009 - Wiley Online Library
Protein phosphorylation on serine, threonine, and tyrosine is well established as a crucial
regulatory posttranslational modification in eukaryotes. With the recent whole‐genome …

dbPTM: an information repository of protein post-translational modification

TY Lee, HD Huang, JH Hung, HY Huang… - Nucleic acids …, 2006 - academic.oup.com
Abstract dbPTM is a database that compiles information on protein post-translational
modifications (PTMs), such as the catalytic sites, solvent accessibility of amino acid residues …

Exoproteomics: exploring the world around biological systems

J Armengaud, JA Christie-Oleza, G Clair… - Expert Review of …, 2012 - Taylor & Francis
The term 'exoproteome'describes the protein content that can be found in the extracellular
proximity of a given biological system. These proteins arise from cellular secretion, other …

[HTML][HTML] Characterization of the E. coli proteome and its modifications during growth and ethanol stress

B Soufi, K Krug, A Harst, B Macek - Frontiers in microbiology, 2015 - frontiersin.org
We set out to provide a resource to the microbiology community especially with respect to
systems biology based endeavors. To this end, we generated a comprehensive dataset …

Metaproteomics of our microbiome—developing insight in function and activity in man and model systems

CA Kolmeder, WM de Vos - Journal of proteomics, 2014 - Elsevier
We are all colonized by a large microbiome, a complex set of microbes that have intimate
associations with us. Culture-based approaches have provided insights in the complexity of …

Characterization of N-terminal protein modifications in Pseudomonas aeruginosa PA14

T Ouidir, F Jarnier, P Cosette, T Jouenne… - Journal of proteomics, 2015 - Elsevier
Even though protein initiator methionine excision (NME) and N-terminal acetylation (NTA)
have been relatively well investigated in eukaryotic proteomes, few studies were dedicated …

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

A Schmidt, M Beck, J Malmström, H Lam… - Molecular systems …, 2011 - embopress.org
Over the past decade, liquid chromatography coupled with tandem mass spectrometry (LC–
MS/MS) has evolved into the main proteome discovery technology. Up to several thousand …

[HTML][HTML] Clinically relevant post-translational modification analyses—maturing workflows and bioinformatics tools

D Pascovici, JX Wu, MJ McKay, C Joseph… - International journal of …, 2018 - mdpi.com
Post-translational modifications (PTMs) can occur soon after translation or at any stage in
the lifecycle of a given protein, and they may help regulate protein folding, stability, cellular …

Bacterial phosphoproteomic analysis reveals the correlation between protein phosphorylation and bacterial pathogenicity

R Ge, W Shan - Genomics, Proteomics and Bioinformatics, 2011 - academic.oup.com
Increasing evidence shows that protein phosphorylation on serine, threonine and tyrosine
residues is a major regulatory post-translational modification in the bacteria. This review …