[HTML][HTML] Relative abundances of species or sequence variants can be misleading: soil fungal communities as an example
L Beule, M Arndt, P Karlovsky - Microorganisms, 2021 - mdpi.com
Plant production systems that are more sustainable than conventional monoculture
croplands are the vision of future agriculture. With numerous environmental benefits …
croplands are the vision of future agriculture. With numerous environmental benefits …
Soil fungal communities respond to grassland plant community richness and soil edaphics
Fungal communities in soil have significant influences on terrestrial ecosystem dynamics,
yet our understanding of the drivers of fungal diversity and community structure in soil is …
yet our understanding of the drivers of fungal diversity and community structure in soil is …
[HTML][HTML] Generalist taxa shape fungal community structure in cropping ecosystems
Fungi regulate nutrient cycling, decomposition, symbiosis, and pathogenicity in cropland
soils. However, the relative importance of generalist and specialist taxa in structuring soil …
soils. However, the relative importance of generalist and specialist taxa in structuring soil …
Accurate estimation of fungal diversity and abundance through improved lineage-specific primers optimized for Illumina amplicon sequencing
While high-throughput sequencing methods are revolutionizing fungal ecology, recovering
accurate estimates of species richness and abundance has proven elusive. We sought to …
accurate estimates of species richness and abundance has proven elusive. We sought to …
DNA template dilution impacts amplicon sequencing-based estimates of soil fungal diversity
Next generation sequencing of taxonomically relevant marker genes has enabled
researchers to sample the richness, diversity, and composition of environmental …
researchers to sample the richness, diversity, and composition of environmental …
Different amplicon targets for sequencing-based studies of fungal diversity
Target-gene amplicon sequencing is the most exploited high-throughput sequencing
application in microbial ecology. The targets are taxonomically relevant genes, with 16S …
application in microbial ecology. The targets are taxonomically relevant genes, with 16S …
Plant genotypic diversity does not beget root-fungal species diversity
The number of genetically distinct individuals within a community is a key component of
biodiversity and yet its impact at different trophic levels, especially upon the diversity of …
biodiversity and yet its impact at different trophic levels, especially upon the diversity of …
Contrasting latitudinal diversity and co-occurrence patterns of soil fungi and plants in forest ecosystems
The diversity patterns of plants at large scale are broadly documented, but that of soil fungi
remains elusive. Limited reports on soil fungal biogeography mainly are based on species …
remains elusive. Limited reports on soil fungal biogeography mainly are based on species …
Fungal community analysis by large-scale sequencing of environmental samples
HE O'Brien, JL Parrent, JA Jackson… - Applied and …, 2005 - Am Soc Microbiol
Fungi are an important and diverse component of soil communities, but these communities
have proven difficult to study in conventional biotic surveys. We evaluated soil fungal …
have proven difficult to study in conventional biotic surveys. We evaluated soil fungal …
Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities
L Danielsen, A Thürmer, P Meinicke… - Ecology and …, 2012 - Wiley Online Library
Fungal communities play a key role in ecosystem functioning. However, only little is known
about their composition in plant roots and the soil of biomass plantations. The goal of this …
about their composition in plant roots and the soil of biomass plantations. The goal of this …