Novel approaches for phylogenetic inference from morphological data and total-evidence dating in squamate reptiles (lizards, snakes, and amphisbaenians)

RA Pyron - Systematic Biology, 2017 - academic.oup.com
Here, I combine previously underutilized models and priors to perform more biologically
realistic phylogenetic inference from morphological data, with an example from squamate …

Combining phylogenomics and fossils in higher-level squamate reptile phylogeny: molecular data change the placement of fossil taxa

JJ Wiens, CA Kuczynski, T Townsend… - Systematic …, 2010 - academic.oup.com
Molecular data offer great potential to resolve the phylogeny of living taxa but can molecular
data improve our understanding of relationships of fossil taxa? Simulations suggest that this …

Integrated analyses resolve conflicts over squamate reptile phylogeny and reveal unexpected placements for fossil taxa

TW Reeder, TM Townsend, DG Mulcahy, BP Noonan… - PLOS …, 2015 - journals.plos.org
Squamate reptiles (lizards and snakes) are a pivotal group whose relationships have
become increasingly controversial. Squamates include> 9000 species, making them the …

The accuracy of methods for coding and sampling higher-level taxa for phylogenetic analysis: a simulation study

JJ Wiens - Systematic Biology, 1998 - academic.oup.com
Many phylogenetic analyses, particularly morphological studies, use higher taxa (eg,
genera, families) rather than species as terminal taxa. This general approach requires …

Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 …

Y Zheng, JJ Wiens - Molecular phylogenetics and evolution, 2016 - Elsevier
Two common approaches for estimating phylogenies in species-rich groups are to:(i)
sample many loci for few species (eg phylogenomic approach), or (ii) sample many species …

Interrogating genomic-scale data for Squamata (lizards, snakes, and amphisbaenians) shows no support for key traditional morphological relationships

FT Burbrink, FG Grazziotin, RA Pyron… - Systematic …, 2020 - academic.oup.com
Genomics is narrowing uncertainty in the phylogenetic structure for many amniote groups.
For one of the most diverse and species-rich groups, the squamate reptiles (lizards, snakes …

Phylogenetic inference and divergence dating of snakes using molecules, morphology and fossils: new insights into convergent evolution of feeding morphology and …

SM Harrington, TW Reeder - Biological Journal of the Linnean …, 2017 - academic.oup.com
Bayesian divergence time analyses were used to simultaneously infer the phylogenetic
relationships and date the major clades of snakes including several important fossils that …

Estimating divergence dates and evaluating dating methods using phylogenomic and mitochondrial data in squamate reptiles

DG Mulcahy, BP Noonan, T Moss, TM Townsend… - Molecular Phylogenetics …, 2012 - Elsevier
Recently, phylogenetics has expanded to routinely include estimation of clade ages in
addition to their relationships. Various dating methods have been used, but their relative …

Not enough skeletons in the closet: collections‐based anatomical research in an age of conservation conscience

CJ Bell, JI Mead - The Anatomical Record, 2014 - Wiley Online Library
The emergence of new technologies and improved computing power helped to introduce a
renewed vitality in morphological research in recent decades. This is especially apparent in …

Noise and biases in genomic data may underlie radically different hypotheses for the position of Iguania within Squamata

N Mongiardino Koch, JA Gauthier - PLoS One, 2018 - journals.plos.org
Squamate reptiles are a major component of vertebrate biodiversity whose crown-clade
traces its origin to a narrow window of time in the Mesozoic during which the main subclades …