Giant taxon‐character matrices: quality of character constructions remains critical regardless of size

TR Simões, MW Caldwell, A Palci, RL Nydam - Cladistics, 2017 - Wiley Online Library
Giant morphological data matrices are increasingly common in cladistic analyses of
vertebrate phylogeny, reporting numbers of characters never seen or expected before …

Deep history impacts present-day ecology and biodiversity

LJ Vitt, ER Pianka - … of the National Academy of Sciences, 2005 - National Acad Sciences
Lizards and snakes putatively arose between the early Jurassic and late Triassic; they
diversified worldwide and now occupy many different ecological niches, making them ideal …

Journeys through discrete‐character morphospace: synthesizing phylogeny, tempo, and disparity

GT Lloyd - Palaeontology, 2018 - Wiley Online Library
Palaeontologists have long employed discrete categorical data to capture morphological
variation in fossil species, using the resulting character–taxon matrices to measure …

Molecular phylogenetics of Squamata: the position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree

TM Townsend, A Larson, E Louis… - Systematic biology, 2004 - academic.oup.com
Squamate reptiles (snakes, lizards, and amphisbaenians) serve as model systems for
evolutionary studies of a variety of morphological and behavioral traits, and phylogeny is …

Bayesian morphological clock methods resurrect placoderm monophyly and reveal rapid early evolution in jawed vertebrates

B King, T Qiao, MSY Lee, M Zhu, JA Long - Systematic Biology, 2017 - academic.oup.com
The phylogeny of early gnathostomes provides an important framework for understanding
one of the most significant evolutionary events, the origin and diversification of jawed …

Hidden support from unpromising data sets strongly unites snakes with anguimorph 'lizards'

MSY Lee - Journal of Evolutionary Biology, 2009 - academic.oup.com
A combined analysis of nuclear, mitochondrial and morphological data robustly resolves
snakes as the sister taxon to anguimorph 'lizards'. Analysed in isolation, nuclear DNA …

Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1

AF Hugall, R Foster, MSY Lee - Systematic biology, 2007 - academic.oup.com
A phylogeny of tetrapods is inferred from nearly complete sequences of the nuclear RAG-1
gene sampled across 88 taxa encompassing all major clades, analyzed via parsimony and …

Ghost lineages and “mammalness”: assessing the temporal pattern of character acquisition in the Synapsida

CA Sidor, JA Hopson - Paleobiology, 1998 - cambridge.org
The origin of mammals has been characterized as a gradual process, a claim based
primarily on a well-preserved series of extinct nonmammalian synapsids (“mammal-like …

Empirical and Bayesian approaches to fossil-only divergence times: a study across three reptile clades

AH Turner, AC Pritchard, NJ Matzke - PloS one, 2017 - journals.plos.org
Estimating divergence times on phylogenies is critical in paleontological and neontological
studies. Chronostratigraphically-constrained fossils are the only direct evidence of absolute …

Do cladistic and morphometric data capture common patterns of morphological disparity?

AJ Hetherington, E Sherratt, M Ruta… - …, 2015 - Wiley Online Library
The distinctly non‐random diversity of organismal form manifests itself in discrete clusters of
taxa that share a common body plan. As a result, analyses of disparity require a scalable …