[HTML][HTML] Sequence-dependent DNA condensation and the electrostatic zipper
JC Sitko, EM Mateescu, HG Hansma - Biophysical Journal, 2003 - cell.com
Sequence-dependent configuration changes and condensation of double-stranded poly (dG-
dC)·(dG-dC)(GC-DNA) and ds poly (dA-dT)·(dA-dT)(AT-DNA) were observed by atomic force …
dC)·(dG-dC)(GC-DNA) and ds poly (dA-dT)·(dA-dT)(AT-DNA) were observed by atomic force …
The observation of the local ordering characteristics of spermidine-condensed DNA: atomic force microscopy and polarizing microscopy studies
Z Lin, C Wang, X Feng, M Liu, J Li… - Nucleic acids research, 1998 - academic.oup.com
Condensation of DNA by multivalent cations can provide useful insights into the physical
factors governing the folding and packaging of DNA in vivo. In this work, local ordered …
factors governing the folding and packaging of DNA in vivo. In this work, local ordered …
Competition between compaction of single chains and bundling of multiple chains in giant DNA molecules
T Iwataki, S Kidoaki, T Sakaue, K Yoshikawa… - The Journal of …, 2004 - pubs.aip.org
It has been established that in a dilute solution individual giant DNA molecules undergo a
large discrete transition between an elongated coil state and a folded compact state. On the …
large discrete transition between an elongated coil state and a folded compact state. On the …
Self-assembly of double-stranded DNA molecules at nanomolar concentrations
S Inoue, S Sugiyama, AA Travers, T Ohyama - Biochemistry, 2007 - ACS Publications
Some proteins have the property of self-assembly, known to be an important mechanism in
constructing supramolecular architectures for cellular functions. However, as yet, the ability …
constructing supramolecular architectures for cellular functions. However, as yet, the ability …
Electrostatic zipper motif for DNA aggregation
AA Kornyshev, S Leikin - Physical review letters, 1999 - APS
Counterion specificity of DNA condensation is rationalized from a theory of electrostatic
interaction between helical molecules that accounts for different charge distribution patterns …
interaction between helical molecules that accounts for different charge distribution patterns …
Rings-on-a-string chain structure in DNA
N Miyazawa, T Sakaue, K Yoshikawa… - The Journal of chemical …, 2005 - pubs.aip.org
Over the past decade, it has been established that a single semiflexible polymer chain can
undergo a discrete first-order phase transition between an elongated coil state and a folded …
undergo a discrete first-order phase transition between an elongated coil state and a folded …
[HTML][HTML] Mechanical Properties of High-G⋅ C Content DNA with A-Type Base-Stacking
The sequence of a DNA molecule is known to influence its secondary structure and
flexibility. Using a combination of bulk and single-molecule techniques, we measure the …
flexibility. Using a combination of bulk and single-molecule techniques, we measure the …
The folded state of long duplex-DNA chain reflects its solution history
S Kidoaki, K Yoshikawa - Biophysical journal, 1996 - cell.com
The higher-order structure of compacted single giant DNA induced by complexation with
polypeptide (poly-Arg) in NaCl solution was investigated using fluorescence microscopy. As …
polypeptide (poly-Arg) in NaCl solution was investigated using fluorescence microscopy. As …
[HTML][HTML] Dielectric control of counterion-induced single-chain folding transition of DNA
D Baigl, K Yoshikawa - Biophysical journal, 2005 - cell.com
In the presence of condensing agents, single chains of giant double-stranded DNA undergo
a first-order phase transition between an elongated coil state and a folded compact state. To …
a first-order phase transition between an elongated coil state and a folded compact state. To …
Amine induced Z-DNA in poly (dG-dC)· poly (dG-dC): Circular dichroism and gel electrophoresis study
A Parkinson, M Hawken, M Hall, KJ Sanders… - Physical Chemistry …, 2000 - pubs.rsc.org
Spermine and [Co (NH3) 6] 3+ are known to induce the B→ Z transition in poly (dG-dC)· poly
(dG-dC) DNA. In this paper gel electrophoresis shift assays using the long DNA poly (dG …
(dG-dC) DNA. In this paper gel electrophoresis shift assays using the long DNA poly (dG …