[HTML][HTML] Evaluation of secretion prediction highlights differing approaches needed for oomycete and fungal effectors
The steadily increasing number of sequenced fungal and oomycete genomes has enabled
detailed studies of how these eukaryotic microbes infect plants and cause devastating …
detailed studies of how these eukaryotic microbes infect plants and cause devastating …
EffectorP: predicting fungal effector proteins from secretomes using machine learning
Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell
to facilitate infection. Computational effector candidate identification and subsequent …
to facilitate infection. Computational effector candidate identification and subsequent …
EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
J Sperschneider, PN Dodds - Molecular plant-microbe …, 2022 - Am Phytopath Society
Many fungi and oomycete species are devasting plant pathogens. These eukaryotic
filamentous pathogens secrete effector proteins to facilitate plant infection. Fungi and …
filamentous pathogens secrete effector proteins to facilitate plant infection. Fungi and …
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
J Sperschneider, PN Dodds… - Molecular plant …, 2018 - Wiley Online Library
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …
[HTML][HTML] An automated and combinative method for the predictive ranking of candidate effector proteins of fungal plant pathogens
Fungal plant-pathogens promote infection of their hosts through the release of 'effectors'—a
broad class of cytotoxic or virulence-promoting molecules. Effectors may be recognised by …
broad class of cytotoxic or virulence-promoting molecules. Effectors may be recognised by …
[HTML][HTML] Computational prediction of effector proteins in fungi: opportunities and challenges
Effector proteins are mostly secretory proteins that stimulate plant infection by manipulating
the host response. Identifying fungal effector proteins and understanding their function is of …
the host response. Identifying fungal effector proteins and understanding their function is of …
[HTML][HTML] EffHunter: A tool for prediction of effector protein candidates in fungal proteomic databases
Pathogens are able to deliver small-secreted, cysteine-rich proteins into plant cells to enable
infection. The computational prediction of effector proteins remains one of the most …
infection. The computational prediction of effector proteins remains one of the most …
[HTML][HTML] Effector biology of biotrophic plant fungal pathogens: Current advances and future prospects
The interaction of fungal pathogens with their host requires a novel invading mechanism
and the presence of various virulence-associated components responsible for promoting the …
and the presence of various virulence-associated components responsible for promoting the …
Prediction of effector proteins and their implications in pathogenicity of phytopathogenic filamentous fungi: a review
Y Wu, L Xie, Y Jiang, T Li - International Journal of Biological …, 2022 - Elsevier
Plant pathogenic fungi encode and secrete effector proteins to promote pathogenesis. In
recent years, the important role of effector proteins in fungi and plant host interactions has …
recent years, the important role of effector proteins in fungi and plant host interactions has …
POOE: predicting oomycete effectors based on a pre-trained large protein language model
M Zhao, C Lei, K Zhou, Y Huang, C Fu, S Yang… - Msystems, 2024 - Am Soc Microbiol
Oomycetes are fungus-like eukaryotic microorganisms which can cause catastrophic
diseases in many plants. Successful infection of oomycetes depends highly on their effector …
diseases in many plants. Successful infection of oomycetes depends highly on their effector …