Prediction of synergistic anti-cancer drug combinations based on drug target network and drug induced gene expression profiles

X Li, Y Xu, H Cui, T Huang, D Wang, B Lian, W Li… - Artificial intelligence in …, 2017 - Elsevier
Objective Synergistic drug combinations are promising therapies for cancer treatment.
However, effective prediction of synergistic drug combinations is quite challenging as …

A review of machine learning approaches for drug synergy prediction in cancer

A Torkamannia, Y Omidi… - Briefings in Bioinformatics, 2022 - academic.oup.com
Combinational pharmacotherapy with the synergistic/additive effect is a powerful treatment
strategy for complex diseases such as malignancies. Identifying synergistic combinations …

DeepSynergy: predicting anti-cancer drug synergy with Deep Learning

K Preuer, RPI Lewis, S Hochreiter, A Bender… - …, 2018 - academic.oup.com
Motivation While drug combination therapies are a well-established concept in cancer
treatment, identifying novel synergistic combinations is challenging due to the size of …

[HTML][HTML] In silico drug combination discovery for personalized cancer therapy

M Jeon, S Kim, S Park, H Lee, J Kang - BMC systems biology, 2018 - Springer
Background Drug combination therapy, which is considered as an alternative to single drug
therapy, can potentially reduce resistance and toxicity, and have synergistic efficacy. As drug …

[HTML][HTML] Interpreting the mechanism of synergism for drug combinations using attention-based hierarchical graph pooling

Z Dong, H Zhang, Y Chen, PRO Payne, F Li - Cancers, 2023 - mdpi.com
Simple Summary This paper introduces a novel graph neural network (a hierarchical graph
pooling model), SANEpool, to effectively detect core sub-networks of significant genes for …

Artificial intelligence and machine learning methods in predicting anti-cancer drug combination effects

K Fan, L Cheng, L Li - Briefings in bioinformatics, 2021 - academic.oup.com
Drug combinations have exhibited promising therapeutic effects in treating cancer patients
with less toxicity and adverse side effects. However, it is infeasible to experimentally screen …

SNRMPACDC: computational model focused on Siamese network and random matrix projection for anticancer synergistic drug combination prediction

TH Li, CC Wang, L Zhang, X Chen - Briefings in Bioinformatics, 2023 - academic.oup.com
Synergistic drug combinations can improve the therapeutic effect and reduce the drug
dosage to avoid toxicity. In previous years, an in vitro approach was utilized to screen …

[HTML][HTML] In-silico prediction of synergistic anti-cancer drug combinations using multi-omics data

R Celebi, O Bear Don't Walk IV, R Movva, S Alpsoy… - Scientific Reports, 2019 - nature.com
Chemotherapy is a routine treatment approach for early-stage cancers, but the effectiveness
of such treatments is often limited by drug resistance, toxicity, and tumor heterogeneity …

Predicting synergistic anticancer drug combination based on low-rank global attention mechanism and bilinear predictor

Y Gan, X Huang, W Guo, C Yan, G Zou - Bioinformatics, 2023 - academic.oup.com
Motivation Drug combination therapy has exhibited remarkable therapeutic efficacy and has
gradually become a promising clinical treatment strategy of complex diseases such as …

[HTML][HTML] DEML: drug synergy and interaction prediction using ensemble-based multi-task learning

Z Wang, J Dong, L Wu, C Dai, J Wang, Y Wen, Y Zhang… - Molecules, 2023 - mdpi.com
Synergistic drug combinations have demonstrated effective therapeutic effects in cancer
treatment. Deep learning methods accelerate identification of novel drug combinations by …