GESS: a database of global evaluation of SARS-CoV-2/hCoV-19 sequences

S Fang, K Li, J Shen, S Liu, J Liu, L Yang… - Nucleic acids …, 2021 - academic.oup.com
The COVID-19 outbreak has become a global emergency since December 2019. Analysis of
SARS-CoV-2 sequences can uncover single nucleotide variants (SNVs) and corresponding …

[HTML][HTML] Evolutionary analysis and lineage designation of SARS-CoV-2 genomes

X Tang, R Ying, X Yao, G Li, C Wu, Y Tang, Z Li… - Science bulletin, 2021 - Elsevier
The pandemic due to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2),
the etiological agent of coronavirus disease 2019 (COVID-19), has caused immense global …

The global landscape of SARS-CoV-2 genomes, variants, and haplotypes in 2019nCoVR

S Song, L Ma, D Zou, D Tian, C Li, J Zhu… - Genomics …, 2020 - academic.oup.com
Abstract On January 22, 2020, China National Center for Bioinformation (CNCB) released
the 2019 Novel Coronavirus Resource (2019nCoVR), an open-access information resource …

[HTML][HTML] Variant analysis of SARS-CoV-2 genomes

T Koyama, D Platt, L Parida - Bulletin of the World Health …, 2020 - ncbi.nlm.nih.gov
Variant analysis of SARS-CoV-2 genomes - PMC Back to Top Skip to main content NIH NLM
Logo Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation …

Mapping genome variation of SARS-CoV-2 worldwide highlights the impact of COVID-19 super-spreaders

A Gómez-Carballa, X Bello, J Pardo-Seco… - Genome …, 2020 - genome.cshlp.org
The human pathogen severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is
responsible for the major pandemic of the twenty-first century. We analyzed more than 4700 …

[HTML][HTML] Analysis of the potential impact of genomic variants in global SARS-CoV-2 genomes on molecular diagnostic assays

A Jain, M Rophina, S Mahajan, BB Krishnan… - International Journal of …, 2021 - Elsevier
An epidemic of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causing
coronavirus diseases (C0VID-19) initially reported in Wuhan, China has rapidly emerged …

[HTML][HTML] HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences

PT Truong Nguyen, I Plyusnin, T Sironen… - BMC …, 2021 - Springer
Background SARS-CoV-2 related research has increased in importance worldwide since
December 2019. Several new variants of SARS-CoV-2 have emerged globally, of which the …

VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes

Q Sun, C Shu, W Shi, Y Luo, G Fan, J Nie… - Nucleic acids …, 2022 - academic.oup.com
The genomic variations of SARS-CoV-2 continue to emerge and spread worldwide. Some
mutant strains show increased transmissibility and virulence, which may cause reduced …

Overwhelming mutations or SNPs of SARS-CoV-2: A point of caution

N Vankadari - Gene, 2020 - Elsevier
The morbidity of SARS-CoV-2 (COVID-19) is reaching 3 Million landmark causing and a
serious public health concern globally and it is enigmatic how several antiviral and antibody …

[HTML][HTML] A novel SARS-CoV-2 viral sequence bioinformatic pipeline has found genetic evidence that the viral 3′ untranslated region (UTR) is evolving and generating …

C Farkas, A Mella, M Turgeon, JJ Haigh - Frontiers in microbiology, 2021 - frontiersin.org
An unprecedented amount of SARS-CoV-2 sequencing has been performed, however,
novel bioinformatic tools to cope with and process these large datasets is needed. Here, we …